Cavenderia fasciculata (cellular slime mold): DFA_11873
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Entry
DFA_11873 CDS
T02668
Name
(RefSeq) DEAD/DEAH box helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFA_11873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_11873
03041 Spliceosome [BR:
dfa03041
]
DFA_11873
03009 Ribosome biogenesis [BR:
dfa03009
]
DFA_11873
03016 Transfer RNA biogenesis [BR:
dfa03016
]
DFA_11873
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DFA_11873
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
DFA_11873
Spliceosome [BR:
dfa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
DFA_11873
Complex C
U4/U6.U5 tri-SnRNP related factors
DFA_11873
Ribosome biogenesis [BR:
dfa03009
]
Eukaryotic type
Pre-60S particles
Helicases
DFA_11873
Transfer RNA biogenesis [BR:
dfa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
DFA_11873
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_16
IstB_IS21
DBC1
Motif
Other DBs
NCBI-GeneID:
14865558
NCBI-ProteinID:
XP_004350817
UniProt:
F4QEJ8
LinkDB
All DBs
Position
Unknown
AA seq
1058 aa
AA seq
DB search
MEDDDLFSVFDQSTSTPQPSKRKAKPDDDKEGKWEGAKNQLSKTVSKVNTAELDQQVQQA
KKKTKTEIEGRQSDISVDSSKPDDTLKQLRESKKDGKDTATAAASDTSTTTTETKFSMPK
TCTHEVVLPPGVTSDDPDLLHPKPPVNPARTYPFTLDPFQATSVACIERKESVLVSAHTS
AGKTVVAEYAIATALRSGQRVIYTSPIKALSNQKYRDLNETFGDVGLMTGDITISPNASC
LVMTTEILRSMLYRGSELMREVAWVIFDEIHYLRDKERGVVWEETIILLPDSVKFVFLSA
TIPNAKEFAAWIAKIHSQPCHVVYTDYRPIPLQHYIFPSGGDGLHLVVDEKGVFREENFI
KSLSGLNQPELGGNNRKKGPNNAKKGPNDCYKIVKMIMERNYQPVIIFSFSKKDCETYAL
QMSKLDFNNEEERKAVETIFNNAIDSLSESDKSLTAVVNILPLLKRGIGIHHAGLLPILK
EIIEILFQYGYIKALFATETFSIGLNMPAKTVIFTNVRKFDGDQLRWVSGGEYIQMSGRA
GRRGLDERGIVIMMVDEKMEPDVAKGMVKGVADRLTSSFWIGYSMLLNMMRVEDIDPEKL
LKRSFHQYQQESIIPQLTDKVQKIEAEKDQIQIKNETAVQEFFGLKQQLAKLRDGMREFM
NQPSCAQPYLTPGRVVKIRDETNEWGYGVILNFYKRQTKPNGITDQSFEIVVDILLNCDP
KAVGVPKPMPAGQVGEPQIVPVSLKMFDGITSICLVIKKDLSQQDLKVQLFKALRETENR
FKKDGGMPMIDPIEDMKITDQNFKKLVRKIESLESRFISHECYNDSDIESRIKLVQEKME
FDKEIKECKKQIKNGDEMILKEDLRSMKRILKRLDYISQDDVVLTKGRVACEISAGDELI
ISELLFMGAFNDLTVEQCVAILSCFVFQVESEKDLTGAKVKPELAPLYRTIQDTARRIAQ
VSQECKLQLDEKEYLNRFNPKYMDLTFAWASGSSFAEICKMTDAFEGYLIRCIRRLDELL
KQMATASKSIGNTDLEKKFSDATLKVHRDIPFAGSLYL
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgacgatttattctctgtatttgatcaatcaacaagtactccacaaccatct
aaaagaaaggcaaagcctgatgatgacaaggaaggtaaatgggagggagcaaagaatcaa
ttatcaaagactgttagtaaagtaaatacagctgaattggatcaacaagtacaacaagcc
aagaaaaagacaaagacagagattgaaggacgtcaatctgatatttctgtagactcttca
aaaccagatgatactttaaaacaattaagagaatctaaaaaggatggaaaggatacagca
acagcagcagcatcagatacatcaactactacaacagaaacaaagttttcaatgccaaag
acatgtacacatgaagtagtattaccaccaggtgttacaagtgatgatccagatcttctt
catcccaaaccaccagtcaatccagcacgtacctatccattcacactcgatcctttccaa
gccacctctgttgcttgtatcgaaagaaaggaatctgtattggtatctgctcatacatct
gctggtaaaactgtagttgcagaatatgcaattgcaacagcattgagaagtggacaaaga
gttatttatacatcaccaattaaagcattgagtaatcaaaagtatagagatctcaatgaa
acatttggagatgttggtttgatgactggtgatattaccattagtccaaatgcaagttgt
ttggtcatgactactgaaattcttagatcaatgttgtatcgtggttcagaattgatgcgt
gaagttgcttgggtcatttttgatgaaattcattatttacgtgataaagaaagaggagta
gtttgggaagaaacgattatattattaccagattctgttaaatttgtattcctttcagct
acaattccaaatgcaaaggaatttgcagcttggattgcaaagattcacagtcaaccatgt
catgttgtctataccgactatcgtcccattccattgcaacattatattttcccatcgggt
ggtgatggtttacatttggtggtcgatgaaaagggtgttttcagagaggaaaactttatc
aaatcgctgtctggtttgaatcaaccagaacttggtggcaacaatagaaaaaagggtccc
aacaatgctaaaaagggtccaaacgattgttacaagattgttaaaatgatcatggaaaga
aattatcaaccagtcattattttcagttttagtaaaaaggattgtgaaacttatgctctt
caaatgtcaaaattagattttaataatgaggaagaaagaaaagcagttgaaactattttt
aataatgcaattgattcattaagtgaatctgataaatcattgacagcagtagttaatatt
ttaccattgttaaagagaggtattggtatacatcatgccggtcttttaccgattctcaag
gaaatcattgaaattttgttccaatacggatacatcaaggctttgtttgctacagagacc
ttttcaattggtcttaatatgcctgccaagactgttattttcaccaatgtcagaaagttt
gatggtgatcaactcagatgggtgtctggtggtgaatacattcaaatgtcaggtagagca
ggtcgtagaggtttggatgagcgtggtatcgttattatgatggtcgacgaaaagatggaa
ccagatgtcgccaagggtatggtcaagggtgttgccgatcgtttgacatcatcgttttgg
attggttacagtatgttgctcaatatgatgcgtgttgaagatatcgatccagagaaactc
ctcaaacgttcattccatcaatatcaacaggaatctatcattcctcaattgacagacaag
gtccaaaaaatcgaagccgaaaaggaccaaattcaaatcaagaatgaaactgccgttcaa
gaattctttggtctcaaacaacaattggccaagttgcgtgatggtatgcgtgaatttatg
aatcaaccatcttgtgctcaaccataccttactccaggtcgtgtagttaaaattcgtgat
gaaacaaatgaatggggttatggtgttattttaaatttctataaaagacaaactaaacca
aatggtattacagatcaatcatttgaaattgtagttgatattttattaaattgtgatcca
aaggcagttggagtaccaaaaccaatgccagcaggacaagttggagaaccacaaattgta
ccagtttcactcaagatgtttgatggtattacatcgatttgtcttgtcatcaaaaaagac
ctttcacaacaagatctcaaggttcaattgttcaaggccttgagagagactgaaaacaga
ttcaaaaaggatggtggtatgccaatgattgacccaatcgaagatatgaaaatcacagac
caaaactttaagaaattggttagaaagattgaaagtttggaaagtagattcatcagtcac
gaatgttacaatgactctgatattgaaagtcgtatcaaactagttcaagaaaagatggaa
tttgacaaggaaattaaagaatgcaaaaaacaaattaaaaatggtgatgaaatgatctta
aaagaagacctaagatcaatgaaaagaattttaaaaagattggattatatttcacaagat
gatgttgttttaaccaaaggaagagttgcatgtgaaatttcagcaggtgatgaattgatt
attagtgaattattatttatgggcgcatttaatgatttgacagttgaacaatgtgtagca
attcttagttgttttgtattccaagtggagtcggaaaaggatctcacaggagccaaggtc
aaaccagagttggcaccattgtacagaaccatccaagacactgcaagaagaatcgctcaa
gtatctcaagaatgcaaacttcaactcgacgaaaaggaatacctcaatagattcaacccc
aagtatatggatctcacctttgcttgggcttctggttcatcttttgccgagatttgcaaa
atgactgatgcttttgaaggttatttgattcgttgtatccgtcgtcttgatgaattatta
aaacaaatggccactgcatctaaatctataggtaatactgatttggaaaagaagttttct
gatgctactctcaaggttcatagagatattccatttgctggttcattatatctttaa
DBGET
integrated database retrieval system
