Cavenderia fasciculata (cellular slime mold): DFA_12137
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Entry
DFA_12137 CDS
T02668
Symbol
repB
Name
(RefSeq) transcription factor IIH subunit
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03022
Basal transcription factors
dfa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DFA_12137 (repB)
09124 Replication and repair
03420 Nucleotide excision repair
DFA_12137 (repB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfa03021
]
DFA_12137 (repB)
03400 DNA repair and recombination proteins [BR:
dfa03400
]
DFA_12137 (repB)
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DFA_12137 (repB)
Transcription machinery [BR:
dfa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
DFA_12137 (repB)
DNA repair and recombination proteins [BR:
dfa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
DFA_12137 (repB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DUF3886
Motif
Other DBs
NCBI-GeneID:
14865375
NCBI-ProteinID:
XP_004351089
UniProt:
F4QC84
LinkDB
All DBs
Position
Unknown
AA seq
810 aa
AA seq
DB search
MSNKNDALKRKRTSTQKTYEKWTDYEEDLEESELNTKTRDPNSIGTNGTGNIPQIGVGEP
KGAFKDYSKRCQIKDNIASKPIWVCPDGRIFLETFSPIYKEASDFLVAIAEPVCRPQLIH
EYQMTPFSLYAAVSVGIDTTHIIKVLNTLSKMEVPPEIESFVRQCTSSYGKVKLVLQRNK
YFVESAHPEVLEFLLRDSVIASARIKQTVADVLADQQLMLDGGPNAATDAPPSLDTATGF
LVGKTMAGQISGGIQPNQLFDKVLLGDEEDTVNNSDQQYHSFEIDSQQVEAVKKRCIQLD
YPMLEEYDFRNDTVNPNLPIDLKPTTMIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL
SGITAACTVKKSILVLCTSAVSVEQWKFQFRLWSNIEEKMISKFTSDNKEKMYSMAGVTI
TTYTMIAFGGKRSPESLKIMNELTTREWGLVLLDEVHVVPAAMFRKVLTVTKAHCKLGLT
ATLLREDEKIQDLSFLIGPKLYEANWLDLQKAGFLANVSCSEIWCEMTAEFYREYLTNDS
QGKKKLLYTMNPNKCRACEYLIRYHEQRGDKIIVFSDNVYALKKYAIEFKRYFIYGETSG
QERLSILRKFQFDPSVRTIFISKVGDTSIDIPEATVIIQISSHYGSRRQEAQRLGRILRP
KPKSDGNYNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYSFKVISELPGLDLETDLHFSSK
EAQLGLLNEVLKEGDDSGRAETLDEDFDDITTGKIKKKKKTTTVTRTTGSMKTLSGGSTN
TSYMEFQKNQQQQQNAPSNMYRVTNHTKYK
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaaaatgatgcattaaagagaaaaagaacaagtacacaaaaaacatatgaa
aaatggacagattatgaagaggatttagaagagagtgaattgaatacaaagacaagagac
cccaattcaataggaaccaatggtactggaaacataccacagattggggttggagaacca
aagggagcattcaaagactattcaaagagatgtcagatcaaagacaacattgcatccaaa
cctatttgggtgtgtcccgatggtagaatctttctcgaaaccttttcaccaatctataaa
gaggctagtgactttttagtggctattgcagaaccagtgtgtcgtcctcaattgattcac
gaatatcaaatgacacccttttcactgtatgcggctgtatcggttggtatcgatacaaca
cacattataaaggtactcaatacattgtcaaagatggaagtaccacctgaaatagaatca
tttgttcgtcaatgtacaagtagttatggcaaggtaaagttggtgctacaaagaaacaaa
tactttgttgaaagtgcacatccagaggtattggagtttttgctaagggattcggttatt
gcatcggctcgtatcaagcagacggttgctgatgtgttggcagaccaacaactaatgttg
gacggcggaccaaacgcagcgaccgacgcaccaccatcactcgacactgcgactggattt
ctcgtcggcaagacaatggctggtcaaatctctggtggtattcaaccaaaccaattgttt
gacaaggtgttgttgggtgatgaagaggatacagtaaacaactcggatcaacaataccac
tcgtttgaaatcgattcgcagcaagttgaagcagtcaaaaagcgttgcatccaactcgat
tatccaatgttggaagaatacgactttagaaacgatactgtcaacccaaacctacccatc
gatctcaaaccaaccactatgattcgtccgtaccaggaaaagagtctttccaagatgttt
ggaaatggtcgtgcaagatctggtattatcgtgcttccatgtggtgctggaaagtcgctg
tctggtatcacggcagcttgtactgtcaaaaagagtattctcgtgctctgcacatcggca
gtgtctgtcgaacagtggaaattccagtttagactatggagtaatatagaagaaaagatg
atctccaagtttacatcagacaacaaggaaaagatgtattctatggccggtgtgactatt
acaacctatacaatgattgcatttggtggaaaacgtagtccggagagtctcaagattatg
aacgagttgactacacgtgaatggggtctagtattgttggacgaggtgcatgtcgtgcca
gctgccatgtttagaaaggttctaaccgtcactaaagcacattgcaagcttggattgact
gctacactcctcagagaagatgaaaagattcaagatctcagtttcctcattggtccaaaa
ctgtatgaggccaattggctcgacctccaaaaggcagggtttcttgccaacgtctcgtgc
tcagagatttggtgtgaaatgacagccgagttttaccgcgagtatctaaccaacgactcg
cagggtaaaaagaagttgctctacactatgaaccccaacaagtgtcgtgcgtgcgagtat
ctcattcgctaccacgaacaacgtggcgacaagatcattgtcttttccgataacgtctat
gcactcaaaaagtacgctatcgagtttaaacgatactttatctatggtgaaacatctggt
caggaacgtctatctatcttgcgaaagttccagtttgacccatcggtccgtaccatcttt
atctccaaggttggtgacacgtcaatcgatattccagaggctacagtcattatccaaatc
tctagtcactatggaagtcgtcgtcaagaggctcaacgtcttggtcgtatcctccgtcca
aagccaaagtctgatggcaactacaatgcctttttctactctcttgtctcaaaggataca
caggaaatgtactatagtacaaagagacaacagttcttgattgatcagggatacagtttc
aaggtcatctctgaactaccaggtctcgacctagagaccgatctccacttttcatcaaaa
gaggctcaactcggtcttctcaatgaagtgctcaaagaaggtgacgacagtggtcgtgct
gaaactttggatgaagatttcgatgatatcacaactggaaagattaaaaagaagaaaaag
actactaccgtcactcgtaccaccggtagtatgaaaactttatcaggtggttcaaccaat
acttcttatatggaatttcaaaaaaatcaacaacaacaacaaaatgctccttcaaatatg
tatcgtgtaactaatcatactaaatataaataa
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