Deinococcus ficus: DFI_03595
Help
Entry
DFI_03595 CDS
T05674
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dfc
Deinococcus ficus
Pathway
dfc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dfc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DFI_03595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfc03021
]
DFI_03595
03400 DNA repair and recombination proteins [BR:
dfc03400
]
DFI_03595
Enzymes [BR:
dfc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DFI_03595
Transcription machinery [BR:
dfc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DFI_03595
DNA repair and recombination proteins [BR:
dfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DFI_03595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3898
Motif
Other DBs
NCBI-ProteinID:
ASN80220
UniProt:
A0A221SUB9
LinkDB
All DBs
Position
complement(710120..714745)
Genome browser
AA seq
1541 aa
AA seq
DB search
MKDFSKVRIAIASPEKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPIKDYECACG
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAG
QLEKVLYFSSFLVTKPMNAQKDGRPLKRGELLSDDEYRELRFGRQETYALPNGTDANIRD
GEYVTRGQVLGGNVVAKMDGLAQYRFPRRAEIAYAEAVEAALPLPASALVDQDAFRAGEI
LAELEEDVSITAPVDGTAFLLEMGEDSVMVEIRETVEAEGDDADAAQGEVLSRVYVPHGM
NVQVANGEIIEAGAVLADAQSGTRLRVSRDSRLSEVQIPKKGDVKLTAHWTRRVDYPINP
TMHVLVGDESQVKKGQKVVGAIDKEEEIIAEADGVMTLHMPASIIVSKAKVYPYQDEPLV
VIGDRVEPGDELADSGNVRSEISGRVEIDLVRKQVRVIESYDFEAKMGAEAVKELLDELD
LDQLEAELGEQMKDSSRHKRAKARKRLEVTRSFKRSGNNPSWMIMNTVPVMPPDLRPMVQ
VDGGRFATSDLNDLYRRLINRNNRLKKLMNQGAPDMIIRNEKRMLQEAVDALIDNGRRGS
PVTNPGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGVPKRMA
LELFKPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLNRAPTLH
RLGIQAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLASHNL
LSPANGEPNVKPSRDIILGIFTLTQLRKDNLGAGTAFTAEQDVLAALRDGTVALNSHITL
NGEDLTPGLLKYNFSNPDEAIMAVERGEIDYQDAVRIRVNGTTHNTSAGRVMFRRLVQEA
LGNQAHLVDTLVNLDTAYEKDALKDMVMACFKELGIEATAGLLDALKASGFKLSTTSGIT
IGIDDIVIPPNKGEILAAADEKQRAIEQNYEFGFMTDEERYKQVVQLWNDTTDEVKAAVF
ENFSQNYPFNPLWIMSQSGARGNPQQVRQLAGMRGLMARPDGSTIEVPIRANFREGLTVL
EYFISTHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGTTDYTTIALGAVDDR
TGEWRTRKGSEIETSIYGRTLVADVTFSDGSVLKEGSMLSLEDVKAITKDAKALGDVMVR
TPLNCRVKSGVCQKCYGYDLSQAKPVSMGEAVGVVAAESIGEPGTQLTMRTFHTGGIAGG
GDITMGLPRVIELFEARKPKVPALIADATGTIHITEEEERYLIKVEADDAAYSGKLHKVS
RAIRLLPEIKDGARVEAGQQLTRGAIYPIDLLEHKDNESAQKYLVDEVQRVYRSQGVKVH
DKHIEVIIRQMLRYVEIVDGGDTDLLEGQTVERFDLDEANNALSEGQTPASWKPVLLGIT
KSSLITKSWLSAASFQHTTHVLTEASMRGQVDDLIGLKENVILGKLIPAGTGLQTVRDMQ
VADDRTLEKYGEGSTSTDAVTGDRSYDDTRPGFTTDVTYTN
NT seq
4626 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttcagcaaagtccgcatcgccatcgccagccccgagaagatccgggaatgg
tcgttcggcgaggtcgaaaaaccggaaaccatcaactaccgcactctgaaacccgaacgc
gagggcctgttcgacgagcgcatcttcgggccgatcaaggactacgagtgcgcctgcggc
aagtacaagcgccagcgctacgagggcaaggtctgcgaacgctgcggcgtggaagtcacc
agcagcaaggtccgccgctaccgcatgggtcacatcgacctggcgaccccggccgcgcac
atctggtacgtcaaggacacccccagcaagatcggcacgctgctggacctcagcgccggg
cagctggaaaaggtgctgtacttcagcagcttcctggtcaccaagcccatgaacgcccag
aaagacggccgtcccctcaagcgcggcgagctgctcagcgacgacgagtaccgcgaacta
cgcttcggccggcaggaaacctacgcccttcccaacggcaccgacgccaacatccgtgac
ggcgagtacgtgacccgcggccaggtgctgggcggcaacgtcgtggcgaagatggacggc
ctggcacagtaccgcttcccccgccgcgccgagatcgcctacgccgaagccgtcgaggcc
gccctgccgctgcccgccagcgccctggtggatcaggacgccttccgcgccggtgagatc
ctcgccgaactggaagaggacgtcagcatcaccgcccccgtggacggcaccgccttcctg
ctcgaaatgggcgaggacagcgtcatggtcgagatccgcgagacggtcgaggcggagggt
gacgacgccgacgccgcccagggcgaagtcctgagccgcgtgtacgtcccgcacggcatg
aacgtgcaggtcgccaacggcgagatcatcgaggccggcgccgtgcttgccgacgcccag
agcggcacccgcctgcgcgtcagccgcgacagccgcctgagcgaagtccagattcccaag
aagggcgacgtgaaactcaccgcccactggacccgccgcgtggactaccccatcaacccc
accatgcacgtcctggtcggcgacgaaagccaggtcaagaaaggccagaaggtcgtcggc
gccatcgacaaggaagaggaaatcatcgccgaggccgacggcgtcatgaccctgcacatg
cccgcgagcatcatcgtgagcaaggccaaggtctacccctaccaggacgagcccctcgtc
gtgatcggcgaccgcgtcgagcccggtgacgaactcgccgacagcggcaacgtccgcagc
gagatcagcggccgcgtggagatcgacctggtgcgcaagcaggtccgcgtgatcgagtcc
tacgacttcgaagccaagatgggcgccgaagccgtcaaggaactgctggacgaactggac
ctggaccagctggaagccgaactgggcgagcagatgaaggactcctcccgccacaagcgc
gccaaggcccgcaagcggctggaagtgacccgcagcttcaagcgcagcggcaacaacccc
agctggatgatcatgaacaccgtgccggtcatgccgccggacctgcgccccatggtgcag
gtggacggcggacgcttcgccaccagcgacctgaacgacctgtaccgccgcctgatcaac
cgcaacaaccgcctgaagaagctgatgaaccagggcgcgccggacatgatcatccgcaac
gagaagcgcatgcttcaggaagcggtggacgccctgatcgacaacggccgccgcggcagc
cccgtcaccaaccccggcagtgaccgcagcctgcgcagcctgaccgacctgctcggcggg
aagcagggccgcttccgccagaacctgctcgggaagcgcgtggactactccggccgcagc
gtgatcgtggtcggcccgcagctcaaactgcaccagtgcggcgtgcccaagcgcatggcc
ctggaactgttcaagccgttcctgttcaaggtgctcgaagagaagggcgaggtcaccaac
atcaagcaggcccgcaagatgctcgaacgctaccgcgacacccgcgacagcgtctgggac
gccctggaagaggtcatcgaggacaaggtcgtgctgctcaaccgcgcgcccaccctgcac
cgcctcggcatccaggccttcgagcccgtgctcgtcgaaggccagagcatccagctgcac
ccgctggtctgtgaagccttcaacgccgacttcgacggcgaccagatggccatccacgtc
cccctgagcgcccaggcgcaggctgaagcgcgcatccagatgctcgcctcgcacaacctg
ctgtcccccgcgaacggcgaaccgaacgtcaaacccagccgcgacatcatcctgggtatc
ttcaccctgactcagctgcgcaaggacaacctgggcgccggcaccgccttcaccgccgaa
caggacgtcctggccgccctgcgtgacggcacggtcgcgctgaacagccacatcaccctg
aacggcgaggacctcacccccggcctgctgaagtacaacttcagcaaccccgacgaggcg
atcatggccgtggaacgcggcgagatcgactaccaggacgccgtgcgcatccgcgtgaac
ggaaccacccacaacaccagcgccggccgcgtcatgttccgccgcctggtgcaggaagcc
ctgggcaaccaggcgcacctcgtggacaccctcgtcaacctcgacaccgcctacgaaaaa
gacgccctgaaagacatggtcatggcgtgcttcaaggaactcggcatcgaggcgaccgcc
gggctgcttgacgccctgaaagccagcggcttcaagctctccaccacctccggcatcacc
atcggcatcgacgacatcgtcatcccgcccaacaagggcgagatcctcgccgccgccgac
gagaagcagcgcgccatcgagcagaactacgagttcggcttcatgacggacgaggaacgc
tacaagcaggtcgtgcagctgtggaacgacaccaccgacgaggtcaaggccgcggtgttc
gagaacttcagccagaactaccccttcaaccccctatggatcatgagccagtccggcgcc
cgtggtaacccccagcaggtccgtcagctggccgggatgcgcggcctgatggcccgcccc
gacggttccacgatcgaagtgccgatccgcgcgaacttccgcgaaggcctgaccgtgctg
gaatacttcatcagcacccacggcgcgcgtaagggcggggccgacaccgcgctccgcacc
gccgactccggctacctcacccgcaaactggtggacgtggcgcacgaagtcgtcgtccgc
gacgtggactgcggcaccaccgactacaccaccatcgccctgggcgccgtggacgaccgc
accggcgaatggcgcacccgcaagggcagcgagatcgagaccagcatctacggccgcacc
ctggtcgccgacgtgaccttcagcgacggcagcgtcctcaaggaaggcagcatgctgtcc
ctggaagacgtcaaggccatcaccaaggacgccaaggccctcggtgacgtcatggtccgc
acccccctgaactgccgcgtcaagagcggcgtgtgccagaagtgctacggctacgacctc
tcccaggccaaacccgtcagcatgggcgaagcggtcggcgtcgtcgccgccgaatccatc
ggcgagcccggcacgcagctcaccatgcgcaccttccacaccggcgggatcgccggcggc
ggcgacatcaccatgggtctgccccgcgtgatcgaactgttcgaagcgcgcaaacccaag
gtccccgccctgatcgccgacgcgaccggcaccatccacatcaccgaggaagaggaacgc
tacctcatcaaggtcgaggccgacgacgccgcctacagcggcaagctccacaaggtcagc
cgcgccatccgcctcctccccgaaatcaaggacggcgcccgcgtcgaagccgggcagcag
ctcacccgcggcgccatctaccccatcgacctgctggaacacaaggacaacgaatccgcc
cagaagtacctggtggacgaagtgcagcgcgtgtaccgcagccagggcgtgaaggtccac
gacaagcacatcgaagtcatcatccgccagatgctccgctacgtggaaatcgtggacggc
ggcgacaccgacctgctcgaaggccagaccgtggaacgcttcgacctcgacgaagccaac
aacgccctcagtgagggccagaccccggccagctggaaacccgtcctgctgggcatcacc
aagagcagcctgattaccaagtcctggctgtccgccgcgagcttccagcacaccacccac
gtgctcaccgaagccagcatgcgcggccaggtggacgacctgatcggcctgaaggaaaac
gtcatcctcgggaaactcatccccgccggcaccggcctccagaccgtgcgggacatgcag
gtcgccgacgaccgcaccctggaaaaatacggcgaaggcagcaccagcaccgacgccgtc
accggggaccgcagctacgacgacacccgccccggcttcaccaccgacgtcacctacacc
aactga
DBGET
integrated database retrieval system
