Deinococcus ficus: DFI_05645
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Entry
DFI_05645 CDS
T05674
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dfc
Deinococcus ficus
Pathway
dfc03410
Base excision repair
dfc03430
Mismatch repair
dfc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DFI_05645
03430 Mismatch repair
DFI_05645
03440 Homologous recombination
DFI_05645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfc03400
]
DFI_05645
DNA repair and recombination proteins [BR:
dfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DFI_05645
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DFI_05645
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DFI_05645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_C
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ASN82044
UniProt:
A0A221SZH4
LinkDB
All DBs
Position
complement(1141375..1143423)
Genome browser
AA seq
682 aa
AA seq
DB search
MRTWGVSAPLAQVLVGRGVTQDLLTPELSLTPNPALREAAGRIVKAIRDKRRLRIHGDYD
ADGVSATAVLVLGLRELGADVHGFIPHRLTDGYGLHPDRLAEHAAACDVLVTVDCGVTNL
EEVRGLLDLGVEVIVTDHHSPGPDFPRTLVVHPHLTENFDGARHNLTGAGVAYHLLWAVH
EELGLPEPSALAPLATLGTIADVAPLVGENRALVQRGLELMAGTELPGLRALMEAGRVKR
PSARDVAFVLAPRINAAGRLGEADVALSLLTTNSAHEAARLAEYLEIRNQERRKLQDTMF
EQALNIVRPEDPALVVTHEDWHAGVMGIVASKLVDTFHKPVFIVAQGKGSVRSTPGISAV
EGLRFSADLLKRFGGHPGAAGFSMDAAQFEAFQGRIHEFVKQFPAPRRTVTLDAALPGKA
ASSDLLDEVLAFEPFGEGHAPPLWHLRDHLSEVRLVGKRGDTLQFRLGALRGLKFGEPQA
APGEHDLAAQLTSSEWRGQSRLELHGQALRRPERLSMAGPDVPGGHLARLDPRAALARLH
AGAAAYATGAVAAYLRDNVPGLTLIQPGEEHPEGTLILYALPDETDLVRWLSGGEVLFAL
GPKTLSDLEGQFSAFAGVPAPASTDADDLRRVRAARAYRQWQWAHHYRTLDDEGWARSVH
AMLGMPVPSVAGVREAALVGAN
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacctggggcgtgtcagcgccgctggcgcaggtgctggtggggcgcggcgtcacg
caggacctgctgaccccggagctgagcctcaccccgaacccggcgctgcgtgaggcggcc
gggcggatcgtgaaagccatccgggacaagcgccgcctgcggattcacggggattacgac
gcagacggcgtgtccgcgacggcggtgctggtgctgggcctgcgggaactgggcgcggac
gtgcacggcttcattccgcaccgcctgacggacgggtacggcctgcacccggaccggctg
gcggagcatgccgcggcctgcgacgtgctggtcacggtggactgcggtgtcacgaacctg
gaggaggtgcgggggctgctggacctgggggtggaggtgatcgtcacggaccaccactct
ccggggccggacttcccgcgcacgctggtggtgcacccgcacctgacggagaacttcgat
ggggctcggcacaacctgacgggcgcgggcgtcgcctaccacctgctgtgggcggtgcac
gaggaactggggctgccggagccgtccgccctggcgccgctggcgacgctggggacgatt
gcggacgtggcgccgctggtcggggagaaccgggcgctggtgcagcgcggcctggagctg
atggcgggtacggaactgccggggctgcgggccctgatggaggcgggccgggtgaagcgc
ccgagcgcccgggacgtggcgttcgtgctggcgccgcgcatcaacgcggccgggcggctg
ggtgaggcggacgtcgccctgagcctcctgaccacgaacagtgcgcacgaggctgcgcga
ctggcggagtacctggagatccgcaaccaggagcgccgcaagttgcaggacacgatgttc
gagcaggcgctgaacatcgtgcggccggaggatccggcgctggtggtcacgcacgaggac
tggcacgcgggtgtgatggggatcgtggcgagcaagctggtggacacctttcacaagccg
gtgttcatcgtggcgcagggcaaggggtcggtgcgcagcacgcccgggatcagtgcggtg
gaaggcctgcggttcagcgcggacctgctcaagcggttcggagggcacccgggcgcggcg
ggcttctcgatggacgccgcgcagttcgaggcattccagggccgcattcacgagttcgtg
aagcagtttcccgcgccccggcggacggtgacgctggacgccgcgctgcccggaaaggca
gcgagcagtgacctgctggacgaggtgctggccttcgagccgttcggggaggggcacgcg
ccgccgctgtggcacctgcgcgaccacctgagcgaggtgcggctggtcgggaagcgtggg
gacacgctgcagttccggctgggggcgctgcgtggcctgaaattcggggagccgcaggcc
gcccccggcgagcatgacctcgcggcgcagctgacgagttccgagtggcgggggcagtcc
cggctggaactgcacgggcaggccctgcgccgcccggagaggctgtccatggcggggccg
gacgtgccgggcgggcacctggcccggctggacccgcgggccgcgctggcccgcctgcat
gcgggggccgcggcgtacgcgacgggcgcggtggcggcctacctgcgggacaacgtgccg
ggcctgacgctgatccagccgggcgaagagcacccggagggcaccctgatcctgtacgcc
ctgccggacgagacggacctggtccgctggctgtcgggcggggaggtgctgttcgcgctg
ggcccgaagaccctgtcggacctggaggggcagttcagcgcctttgcgggcgtgcccgcg
ccggccagcacggacgccgacgacctgcgacgggttcgggcagccagggcgtaccggcag
tggcagtgggcgcaccactaccgcacgctggacgacgagggctgggcgcgcagcgttcac
gcgatgctggggatgccggtgccctcagtggcaggggtgcgggaggctgctctggtgggc
gccaactga
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