Deinococcus ficus: DFI_06085
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Entry
DFI_06085 CDS
T05674
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dfc
Deinococcus ficus
Pathway
dfc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DFI_06085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfc03400
]
DFI_06085
Enzymes [BR:
dfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DFI_06085
DNA repair and recombination proteins [BR:
dfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DFI_06085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UvrB_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASN82057
UniProt:
A0A221SZH5
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All DBs
Position
1228166..1231273
Genome browser
AA seq
1035 aa
AA seq
DB search
MPAAPAGNLLLLPQVARAALFAAHPGPAVLLTTPDRIGSYASAGALGAPVSVNPGLRDWD
ARHEHVVLDVNTAIDLFPARPEDHALSLKVGASYPREALLARLEAFGYERGEEPGYELRG
DTLELRLTPGAGLPAEAEEDLWVRAEFFGDELDTLRTLRPGEVSGVKTQAFTLEPTAEYL
TETRWDATRLDLLPGRVFLDSPEFYASSLGVLIDTLWPKLEGRDVTSFGRAPLDLPDLDT
GLTALPFYRARLSDLDRDVQEWRGAGYRVFILVRHDRTAAYLADKLLNTHEIPWLTVPRL
PEGGLGFLRASGEGGFVIPEFNTVVLTEDLIYGFQGGSALRGKKLTGRPVTDALGLHVGD
YLIHPEHGIGQFEGLETRKVLGVTRDYLNLQYRNGARLSVPIEQLPVLRRHPGTTDDPPV
LSSFDKKDWARAKEKARKNAEEVAGKLLIQYAARQVTPGNAFPPNPEWDEQVEKNFKFDL
TSDQRISLKETLRDLEKPNPADRLISGDVGFGKTEVALRAAHRVVGHGKQVAILVPTTLL
AEQHTTTFVERFKDLPVRVEGLSRFTTPQQSKRILADVRAGKVDILIGTHRLLSGDIEFK
DLGLIIVDEEHRFGVGQKEKLRALRGLPALEGGKLDLPEGQKAVDTLALSATPIPRTLYM
SMVGLRDMSSIQTPPKGRKPIQTILAPFDPSTVRDAIMTEIDRGGKVFYIHDRIASIGAR
SLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQGAFDVLLATTIVETGLDIPEANTILI
ERADRLGLAQLYQLRGRVGRRQQTAYAYLFYPPRMTENAQRRLWAIADLQDLGSGHLLAE
KDMEIRGVGNILGEEQHGHVQAVSIDVYTEMLAEAVARLKGEKREEPVSISIDLPVNARL
SPEYFSADGPEKGEEARIATYGRLSEARTLQAISRVERDLRKKYGPPSPEVQNFIDLAKL
RLTAAAKRVLSIGETMTHLQITFAYKALDYDAPGLKRFPHRTEVQTFPPSVKLEKRGLKP
DDYARTLIDLLGYFG
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcggcgcccgcaggaaacctgctgctgctgccgcaggtggcgcgcgcggcgctg
ttcgcggcgcacccgggcccggcggtgctgctcaccaccccggaccggatcggcagttac
gcgtccgccggggcgctgggggcgcccgtcagcgtgaaccccggcctgcgtgactgggac
gccaggcacgagcacgtcgtgctggacgtgaacaccgctatcgacctgttccccgcccgc
ccggaagaccacgccctgagcctgaaggtcggcgcgagctacccgcgcgaggcgctgctg
gcccggctggaagccttcgggtacgagcggggcgaggaacccggctacgaactgcgcggc
gacacactggaactgcgcctgacgcccggcgccggcctgcctgccgaggccgaggaggac
ctgtgggtgcgcgccgagttcttcggggatgaactggacaccctccgcaccctgagaccc
ggcgaggtgagcggcgtgaagacgcaggcgttcacgctggagcccaccgccgagtacctc
acggaaacgaggtgggacgccacgcggctggacctgctgcccgggcgggtgttcctggac
tccccggagttctatgccagcagcctgggcgtcctgatcgacaccctctggccgaaactg
gagggccgggacgtgaccagtttcggccgggcgccgctggacctcccggacctggacacc
ggcctgaccgccctgccgttttaccgcgcgcgcctcagcgacctggaccgcgacgtgcag
gagtggcgcggcgccgggtaccgcgtgttcatcctggtacgccacgaccgcaccgccgcc
tacctggcggacaagctgctgaacacccacgagatcccctggctgaccgtgccgcgcctt
ccggaaggcggcctgggcttcctgcgcgccagcggcgagggcggcttcgtcattcccgag
ttcaacacggtcgtcctgaccgaggacctgatctacggcttccagggcggcagcgccctg
cgcggcaagaagctcaccgggcggcccgtcacggacgcgctgggcctgcacgtcggcgac
tacctgattcacccggagcacggcatcgggcagttcgagggcctggaaacccgcaaggtg
ctgggcgtcacccgcgactacctgaacctccagtaccggaacggcgcgcgcctgagcgtg
cccatcgagcagctgcccgtcctgcgccgccaccccggcaccaccgacgatccgccggtg
ctgagcagcttcgacaagaaagactgggcgcgcgccaaggaaaaagcccgcaagaacgcc
gaggaagtcgccgggaagctcctcatccagtacgcggcgcggcaggttacgcccggcaac
gccttcccccccaaccccgaatgggacgagcaggtggagaagaacttcaagttcgacctc
accagcgaccagcgcatctccctgaaagaaaccctgcgggacctcgaaaaacccaacccc
gccgaccgcctgatctcgggcgacgtgggcttcgggaagaccgaggtggccctgcgcgcc
gcgcaccgcgtcgtcgggcacggcaagcaggtcgccatcctggtgcccaccaccctgctc
gccgagcagcacaccaccaccttcgtcgagcgcttcaaggacctgcccgtgcgtgtggag
ggcctgtcgcgcttcaccacgccgcagcagtccaaacgcatcctcgcggacgtccgcgcc
ggcaaggtggacatcttgatcggcacgcaccgcctgctgtccggcgacatcgagttcaag
gacctgggcctgatcatcgtggacgaagaacaccgcttcggggtgggccagaaagaaaag
ctccgcgcgctgcgcggcctgcccgccctcgaaggcggcaagctggacctcccggaaggg
cagaaggcggtggacaccctggccctgtccgccacgcccatcccccgcacgctgtacatg
agcatggtcggcctgcgcgacatgagcagcatccagaccccacccaagggccgcaaaccc
atccagacgatcctggcgcccttcgaccccagcaccgtgcgcgacgcgatcatgaccgag
atcgaccgcggcggcaaggtcttctacatccacgaccgcatcgccagcatcggcgcccgc
agcctgtacctgcgcaacctcgtgcccgaagcgcgcatcggcgtcgcgcacggccgcatg
aacgaggaagaactcgaggagatcatgctcggcttcgaacagggcgccttcgacgtgctg
ctcgccaccaccatcgtcgaaaccggcctggacatccccgaggcgaacaccatcctgatc
gaacgcgccgatcggctcggcctcgcgcagctctaccagctgcgtggccgcgtcggccgc
cgccagcagaccgcgtacgcctacctcttctaccccccacgcatgaccgagaacgcccag
cggcgcctgtgggccatcgccgacctccaggacctcggcagcggccacctgctcgccgaa
aaggacatggagatccgcggcgtgggcaacatcctcggcgaggaacagcacgggcacgtg
caggccgtcagcatcgacgtgtacaccgagatgctcgccgaggccgtcgcccgcctcaag
ggcgagaaacgcgaggagcccgtcagcatcagcatcgatctgcccgtcaacgcccgcctc
agccccgagtacttcagcgccgacggccccgaaaaaggcgaggaagcccgcatcgccacc
tacggccgcctcagcgaagcccgcaccctccaggcgatcagccgcgtggaacgcgacctg
cgcaagaagtacggcccgcccagccccgaagtgcagaacttcatcgacctcgccaaactc
cgcctcaccgccgccgccaaacgcgtgctgagcatcggcgagaccatgacccacctccag
atcaccttcgcgtacaaggccctggactacgacgcccccggcctcaaacgcttcccccac
cgcacggaagtgcagaccttcccgcccagcgtgaaactggaaaaacgcggcctgaaaccc
gacgattacgcccgcaccctgatcgatctgctcggctacttcgggtaa
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integrated database retrieval system
