Deinococcus ficus: DFI_07000
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Entry
DFI_07000 CDS
T05674
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dfc
Deinococcus ficus
Pathway
dfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFI_07000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfc03019
]
DFI_07000
03400 DNA repair and recombination proteins [BR:
dfc03400
]
DFI_07000
Enzymes [BR:
dfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DFI_07000
Messenger RNA biogenesis [BR:
dfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DFI_07000
DNA repair and recombination proteins [BR:
dfc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DFI_07000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
RQC
RecQ_Zn_bind
DEAD
Helicase_C
HHH
AroM
Motif
Other DBs
NCBI-ProteinID:
ASN80783
UniProt:
A0A221SVX1
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All DBs
Position
1431300..1433516
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AA seq
738 aa
AA seq
DB search
MTAVSPTNLDTRALDILHRVWGYGAFRGVQADIVRTVAAGGNALVLMPTGGGKSLCYQVP
SLLRDGTGIVVSPLIALMKDQVDALRENGVRAAYLNSTLSLPEVREVEEALLAGELDLLY
VAPERLLLPRTLDLLERAPVALFAIDEAHCVSQWGHDFRPEYGQLGVLPERFPHLPRVAL
TATADDRTRADILNVLHLHGAPQFVSSFDRPNIQYRVANKEAPKSQLLDFIRGEHAGDAG
IVYCLSRKSVEDTARWLTAQGVEAVPYHAGLSPRERNTAQERFLNEEGLVVAATVAFGMG
IDKPNVRFVAHLDLPKSMEGYYQETGRAGRDGLPSTAWMVYGLADVVNVRRMLAQSDAPE
EVKRVEAGKLDALLTYCETAACRRQVLLAYFGEELREPCGNCDTCLNPPRVHDATREAQM
ALSAVIRTGNRFGAAHVTDVLLGRETERVLALGHHQLPTFGVGAGHDEKFWRGILRQLTS
LGHLTAGEHHGLSATGRARPLLKGEAEFRVREDSLLPRETVKRRERTSRASGAVAEADRG
LFEALRAWRLGRAKELAVPPYVIFSDATLKGIAETRPGSHAALGLVSGVGQRKLTDYGDE
VLQVVRDQGGEPRAGAPLTDAQRGTAANLAVLNVLRAGRAASASPAPGGPGAPLLSVSVP
EPARQEAVTEALRALRQELCRETGHSPFVVLPNATLAALAERQPRTLEELRGLPGMGEKR
IEAYGRRVVEAVSAALGG
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtgactgccgtctcccccaccaacctcgacacccgcgccctcgacatcctccaccgggtc
tgggggtacggcgcgttccggggcgtgcaggccgacatcgtccgcaccgtcgccgccggc
ggcaacgccctggtcctgatgcccaccggcggcgggaagagcctgtgctaccaggtgccc
agcctgctgcgcgacggcaccggcatcgtcgtctcccccctgatcgccctgatgaaggac
caggtggacgccctgcgcgagaacggcgtgcgcgccgcgtacctgaactccaccctgagc
ctccctgaagtccgcgaggtggaggaggcgctgctggccggtgagctggacctgctgtac
gtggcgcccgagcggctgctcctgccccgcaccctggacctgctggaacgcgccccggtg
gccctgttcgccatcgacgaggcgcactgcgtgtcccagtggggccacgacttccggccc
gagtacgggcagctgggcgtgctgcccgaacgcttcccgcacctgccgcgcgtggcgctg
accgccaccgccgacgaccggacccgggcggacatcctgaacgtgctgcacctgcacggc
gcgcctcagttcgtgagttccttcgaccggccgaacatccagtaccgcgtggcgaacaag
gaagcccccaagtcccagctgctggacttcatccggggcgagcacgccggggacgccggc
atcgtgtactgcctgagccgcaagagcgtggaggacaccgccaggtggctcacggcgcag
ggtgtggaggccgtgccgtaccacgcgggcctcagcccccgagagcgcaacaccgcgcag
gagcgcttcctgaacgaggagggactggtcgtggcggccaccgtggctttcggcatgggc
atcgacaagcccaacgtgcgcttcgtggcgcacctggacctgcccaagagcatggaaggg
tactaccaggaaaccggccgcgcgggccgtgacgggctgcccagcaccgcctggatggtg
tacggcctggcggacgtggtgaacgtgcgccgcatgctcgcgcagagcgacgcgccggag
gaggtcaagcgcgtggaggccgggaagctggacgcgctgctcacctactgcgagacggcc
gcgtgccgccggcaggtgctcctggcgtacttcggggaggagttgcgggaaccctgcggg
aactgcgacacctgcctgaatccgccgcgcgtgcacgacgccacccgcgaggcgcagatg
gcgctgtcggccgtgatccgcaccgggaaccgcttcggggcggcgcacgtcacggacgtt
ctgctgggccgggagaccgagcgtgtgctggcgctggggcaccaccagctgcccaccttc
ggggtgggagccgggcatgacgagaagttctggcgcggcatcctgcggcagctgaccagc
ctgggccacctgacggccggcgagcaccacggcctgagtgccaccggccgggcccgcccg
ctcctgaagggcgaggcggaattccgggtgcgggaggacagcctgctgccgcgcgagacc
gtgaagcgccgcgagcggaccagccgggcgagcggcgcggtagccgaggcggaccggggc
ctgttcgaggcgctgcgggcgtggcggctgggccgcgcgaaggaactggcggtgccgccg
tacgtgatcttcagcgacgcgacgctcaagggcatcgcggagacgcggccgggcagccac
gccgcgctgggcctggtgagcggcgtggggcagcgcaaactcacggattacggagacgag
gtgctgcaggtcgtccgtgaccagggcggggagccgcgggccggggcgcccctcaccgac
gcgcagcgcgggaccgccgccaacctcgcggtgctgaacgtgctgcgggccggccgggcg
gcgtcggccagcccagccccgggaggcccaggcgcaccgctgctgtccgtgtcggtgcct
gaaccggcgcggcaggaggcggtgaccgaggcgctgcgggcgctgcgtcaggagctgtgc
cgggagaccgggcacagccccttcgtggtgttaccgaacgccacgcttgctgccctggcc
gagcggcagccccgcacgctggaggagttgcggggcctgccgggcatgggcgagaaacgc
attgaggcgtacgggcggcgggtggtggaggcggtcagcgccgcgctgggcggctga
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