Deinococcus ficus: DFI_08160
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Entry
DFI_08160 CDS
T05674
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dfc
Deinococcus ficus
Pathway
dfc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dfc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DFI_08160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfc03021
]
DFI_08160
Transcription machinery [BR:
dfc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DFI_08160
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
ASN80973
UniProt:
A0A221SWG0
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Position
complement(1664266..1665924)
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AA seq
552 aa
AA seq
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MADSTKPTKSTKAAATDAPAKVDAPAKSTKPRTRVKAAAPGAAPTAPAAAARVDAEPAAK
PKPAAKAAPKADKPAAEKKAADDTAAPKAAKAPAKKAPAKAKPAEAAADSAEGPAEPAKK
AGKAAKPAKATAKAAPAKGAATDKPYYAHPSIQEMLKAGKAAGVLSSEEVAAALGVALEA
SGLDPESPDAFEDMQLFLAGQQIEVQDVDEDDEDTDSDDAETEDDVPGTRAQSDDDEEKY
FDDMPRAVSNDPVRQYLHEIGRVSLLTLEEEIALARRIEEGEEARKLLDEDVELDDRGRR
RLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQEGNQGLIRAVEKFEYRR
RYKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREATHEEI
AEAMGPGWDAAKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPVENAAKTLLS
EELEKALSKLTEREAMVLKFRKGLVDGREHTLEEVGQRFNVTRERIRQIENKALRKLKYH
ESRTRKLRDFLD
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggcagattccaccaagcccaccaagagcaccaaagccgccgcgaccgatgcccccgcc
aaggtggacgcccccgccaaatccaccaagccccgcacccgcgtgaaggccgccgccccc
ggcgcggcccccaccgccccggccgccgcggcccgggtggacgccgagcccgccgccaag
cccaaaccggccgcgaaggccgcgccgaaggcggacaagcccgccgccgagaagaaggcc
gcggacgacacggccgccccgaaggccgccaaggcccccgcgaagaaggccccggcgaaa
gcgaagccggccgaggccgccgcagacagcgcggaaggccccgccgaaccggccaagaag
gccggcaaggccgccaagccggccaaggccaccgcgaaggccgcgcccgccaagggcgcc
gccaccgacaaaccctactacgcgcaccccagcatccaggagatgctcaaggccggcaag
gccgccggcgtgctctccagcgaggaggtcgccgccgccctgggcgtcgcgctggaagcc
agtggcctggacccggaaagcccggacgccttcgaggacatgcagctgttcctggccgga
cagcagatcgaggtgcaggacgtcgacgaggacgatgaggacaccgactccgacgacgcc
gagaccgaggacgacgtccccggcacccgcgcgcagagcgacgacgacgaggagaagtac
ttcgacgacatgccccgtgccgtgtccaacgacccggtgcgccagtacctgcacgagatc
ggccgcgtctcgctgctcaccctggaagaggaaatcgcgctcgcccgccgcatcgaggaa
ggcgaggaggcccgcaagctcctggacgaggacgtggaactggacgaccggggccgccgc
cgcctgatgcggcagatggaggacggcgccgccgcccgccagggcctgatcgaggcgaac
ctccgcctggtcgtcagcatcgccaagaagtacacgggccgcggcctgggcttcctggac
ctgattcaggaaggcaaccagggcctgatccgcgcggtggagaagttcgagtaccgccgc
cgctacaagttctccacgtacgccacgtggtggatccgtcaggcgatcaaccgcgccatc
gccgaccaggcccgcaccatccgcattccggtgcacatggtcgagaccatcaacaagctc
acccgcaccgcccggcagctgcagcaggaactgtcccgcgaggccacgcacgaggagatc
gccgaggcgatgggccccggctgggacgccgcgaaggtcgaggaagtgcagaaggtcagc
caggagcccgtcagcctggaaacgcccatcggggacgagaaggacagcttctacggtgat
ttcatccccgacgagaacctggacagccccgtcgagaacgccgccaagaccctgctctcc
gaggaactggaaaaggccctgagcaagctcaccgagcgtgaggcgatggtcctgaagttc
cgcaagggcctcgtggacggccgtgagcacaccctggaggaggtcgggcagcgcttcaac
gtcacgcgtgaacgcatccgccagatcgagaacaaggcgctgcgcaagctcaagtaccac
gagagccgcacccgcaaactccgcgacttcctcgactga
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