Deinococcus ficus: DFI_10100
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Entry
DFI_10100 CDS
T05674
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dfc
Deinococcus ficus
Pathway
dfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFI_10100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfc03019
]
DFI_10100
03016 Transfer RNA biogenesis [BR:
dfc03016
]
DFI_10100
Enzymes [BR:
dfc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DFI_10100
Messenger RNA biogenesis [BR:
dfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DFI_10100
Transfer RNA biogenesis [BR:
dfc03016
]
Prokaryotic type
tRNA degradation factors
DFI_10100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ASN81319
UniProt:
A0A221SXD4
LinkDB
All DBs
Position
2080058..2082373
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AA seq
771 aa
AA seq
DB search
MIGKTYTTMLGGRELSIETGKLAKLVSGSVTVRYGDTMLLVTAQASDTQSKLDFLPLTVE
FEERHYAVGKIPGSFHRREGRPGEKAILSARITDRQIRPLFPKGYRHETQVIITVVSADG
QNAPDVLGPIGASAALSLSDIPWAGPTACVRVGQVDGQFVVNPTAEQLSRSRMDLVVAGT
KDAVMMVECGAQTVGEDELVAAIEFAHAEMQGVIGLIETMRAELGQEKFNFVAAAGPSVD
YVPEMAERALAAGLRDALLTPKKKDRSARTKAVRNAVIEAMVPDVAAEGAEEKIAALKDA
YSKVEKQELRRLILEDDLRADGRNSRTVRPIWIEARALPRAHGSAIFTRGETQVLGVTTL
GTERDEILIDDLTEETGDKFLLHYNFPPYSTGEVKRMGGQSRREVGHGNLAKRAIRAVLP
SFEEFPYVIRVVGDVLESNGSSSMATVCAGILSLMDAGVPIKAPVAGVAMGLVMEGERYR
VLTDILGMEDALGDMDFKVCGSAEGVTALQMDIKVGGITPAIMREALAQAREGRLHILGK
MAEVLAAPRAELSPTAPRIVSMKINPELIGKVIGPGGKQVRELEAMGAQVTIEEDGTIRI
FSADAAAAQAVQAKIAGLTKEAKVGEEFHGTVVKTAAFGAFVNLFPGQDGMLHISQISEE
RVNAVEDVLKVGDKLHVKIVNIDDRGKIDLVRPELEGKVAPRAPREPRSGDRGDRGPRRD
FGDRGDRGPRREGGERREFSGERADRGPRPERTEAGDAPAPAPAADRNSNE
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgatcggtaagacgtacacgacgatgctgggcgggcgcgaactcagcatcgagaccggg
aaactggcgaaactggtgagcggcagcgtgaccgtgcggtacggcgacacgatgctgctc
gtgaccgcgcaggccagcgacacgcagagcaaactggatttcctgccgctgacggtggag
ttcgaggagcggcattacgcggtcgggaagattcccggcagcttccaccgccgcgagggc
cggcccggggagaaggcgatcctgagtgcgcgcatcaccgaccggcagatccggccgctg
ttcccgaaaggttaccggcacgagacgcaggtgattatcacggtcgtgagcgccgacggg
cagaacgctccggacgtgctcgggccgatcggggcgtccgcggcgctgagcctgagtgac
attccctgggcgggcccgacggcgtgcgtgcgggtggggcaggtggacgggcagttcgtg
gtgaaccccaccgcggagcagctgtcgcgcagccgcatggacctggtggtggcgggcacg
aaggacgccgtgatgatggtcgagtgcggcgcgcagacggtcggtgaggacgagctggtg
gccgccatcgagttcgcgcacgcggagatgcagggcgtgatcggcctgatcgagacgatg
cgtgccgagctggggcaggagaagttcaacttcgtggccgcggccggtcccagcgtggac
tacgtgccggagatggccgagcgggcgctggcggccgggctgcgcgacgcgctgctcacg
ccgaagaagaaggaccgcagcgcccgcacgaaggccgtgcgcaacgccgtgatcgaggcg
atggtgccggacgtggcggccgagggggccgaggagaagattgccgcgctgaaagacgcc
tacagcaaggtggagaaacaggaactgcgccgcctgatcctggaggacgacctgcgcgcc
gacggccgcaacagccgcaccgtgcggcccatctggatcgaggcgcgcgccctgccccgc
gcgcacgggagcgccatcttcacccgcggggagacgcaggtgctgggcgtgaccacgctg
ggcaccgagcgcgacgagatcctcatcgacgacctgaccgaggagaccggggacaagttc
ctgctgcactacaacttcccgccgtacagcacgggcgaggtcaagcgcatgggcgggcag
tcccgccgcgaggtcgggcacggcaatctcgccaagcgcgccatccgggcggtgctgccc
agcttcgaggagttcccgtacgtgatccgcgtggtgggcgacgtgctggaatccaacggg
agcagcagcatggcgaccgtgtgcgccggcatcctgagcctgatggacgcgggcgtgccg
atcaaggcgccggtcgcgggcgtggcaatgggcctcgtgatggaaggcgagcgctaccgc
gtgctcaccgacatcctgggcatggaggacgcgctgggcgacatggacttcaaggtgtgc
ggcagcgccgagggcgtcaccgccctgcagatggacatcaaggttggcgggatcaccccg
gcgatcatgcgtgaggcgctcgcgcaggcccgcgagggccgcctgcacatcctgggcaag
atggccgaggtgctcgccgcgccccgtgccgagctctcccccaccgcgccccgcatcgtg
agcatgaagatcaaccccgagctgatcgggaaggtcatcggccccggcggcaaacaggtg
cgggaactggaggcgatgggcgcgcaggtgaccatcgaggaggacggcaccatccgcatc
ttcagcgccgacgcggccgccgcgcaggccgtgcaggctaagatcgcgggcctgacgaag
gaagcgaaggtgggcgaggagttccacggcacggtcgtgaagacggccgcgttcggggcg
ttcgtgaacctgttccccgggcaggacggcatgctgcacatctcgcagatcagcgaggag
cgcgtgaacgccgtggaggacgtcctgaaggtcggggacaagctgcacgtcaagatcgtg
aacatcgacgaccgcggcaagatcgacctcgtgcgcccggagctggagggcaaggtcgcg
ccgcgcgcgccccgtgaaccgcgcagcggcgaccggggggaccgtggcccgcgccgggac
ttcggggaccgtggcgaccggggcccgcgccgtgaaggcggggaacgccgcgagttcagt
ggcgagcgcgccgaccgcggcccgcgccccgagcggaccgaagcgggcgacgctccggct
cccgcgccggccgcggaccggaacagcaacgagtaa
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