Deinococcus ficus: DFI_13075
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Entry
DFI_13075 CDS
T05674
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dfc
Deinococcus ficus
Brite
KEGG Orthology (KO) [BR:
dfc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dfc03016
]
DFI_13075
Enzymes [BR:
dfc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DFI_13075
Transfer RNA biogenesis [BR:
dfc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DFI_13075
Prokaryotic type
tRNA splicing ligases
DFI_13075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ASN81800
UniProt:
A0A221SYW2
LinkDB
All DBs
Position
complement(2667087..2668490)
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AA seq
467 aa
AA seq
DB search
MNGKHISKLGFEKKAIKLALEAAHTREDAGVSSAEILQELQAVQADPAAYLRGGVYADLA
AELSTQQGVKRAQQAADLRPSALPYRVWGEDLIDPGAHAQMDVAMRLPVSRAGALMPDAH
VGYGLPIGGVLATENAVIPYGVGVDIGCSMMLSVLPVHPDELGTDEARALLMKHTRFGAG
VAFEKRDRLDHAVLHEDTWKEQPLLKHLHPKATEQIGTSGSGNHFVEFGTLTLHQPDLDL
EAGTYLAVLSHSGSRGFGAQVAGHFTALAQKRWPTLDRAAQKLAWLPLDSHEGQAYWQAM
NLAGRYALANHDLIHRRLARALNVTPGAQVSNSHNLAWKQRVNGEELIVHRKGATPAEAG
RLGLIPGSMADPGYVVRGRGNAQALDSASHGAGRQLGRKAAANTLAKKDVQAYLKDKGIT
LIGGGIDEAPQAYKRIQDVMARQDDLIDIVAEFRPRVVRMDTGSEDV
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaacggaaaacacatcagcaaactcggcttcgagaaaaaagccatcaaactcgccctg
gaagccgcccacacccgcgaggacgccggcgtgagcagcgccgagatcctccaggaactc
caggcggtgcaggccgacccggccgcctacctgcgcggcggcgtgtacgccgacctggcc
gccgaactctccacgcagcagggcgtgaaacgcgcccagcaggccgccgacctgcgcccc
tcggccctgccgtaccgcgtgtggggcgaggacctgatcgacccgggcgcgcacgcgcag
atggacgtcgccatgcgcctgcccgtctcccgcgccggggccctcatgcccgacgcgcac
gtcgggtacggcctgcccatcggcggggtgctcgccaccgagaacgccgtgattccctac
ggcgtgggcgtggacatcgggtgcagtatgatgctctcggtgctgcccgtacaccccgac
gaactgggaaccgacgaggccagggccctgctgatgaagcacacccgcttcggcgcgggc
gtcgccttcgagaaacgcgaccggctggatcacgccgtcctgcacgaggacacctggaag
gagcagcctctcctcaaacacctgcaccccaaggccaccgagcagatcggcacgtccggc
agcgggaaccacttcgtggagttcggcaccctgaccctgcaccagccggacctggacctg
gaggccggcacgtacctggccgtgctgtcgcacagcggctcacgcggcttcggcgcgcag
gtggccgggcacttcacggccctggcgcagaaacgctggccgaccctggaccgcgccgcg
cagaagctcgcgtggctgcccctggactcccacgagggccaggcgtactggcaggccatg
aacctcgccgggcgttacgccctggcgaaccacgacctgatccaccgccgcctcgcccgc
gcgctgaacgtcacgcccggcgcgcaggtcagcaacagccacaacctcgcctggaaacag
cgcgtgaacggcgaggaactcatcgtgcaccgcaagggcgccacgcctgccgaggccggc
cgcctgggcctgatccccggcagcatggccgaccccgggtacgtggtccgcggccgcggg
aacgcccaggcgctcgacagcgccagccacggcgccggccggcagctcggccgcaaggcc
gccgcgaacaccctggcgaaaaaagacgtgcaggcctacctgaaggacaagggcatcacc
ctgatcggcggcggcatcgacgaggccccgcaggcgtacaagcgcattcaggacgtcatg
gcccggcaggacgacctgatcgacatcgtcgccgagttccgcccgcgcgtggtccgcatg
gacaccggcagcgaggacgtgtaa
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