Deinococcus ficus: DFI_13420
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Entry
DFI_13420 CDS
T05674
Name
(GenBank) topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dfc
Deinococcus ficus
Brite
KEGG Orthology (KO) [BR:
dfc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dfc03032
]
DFI_13420
03400 DNA repair and recombination proteins [BR:
dfc03400
]
DFI_13420
Enzymes [BR:
dfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DFI_13420
DNA replication proteins [BR:
dfc03032
]
Prokaryotic type
DNA Topoisomerases
DFI_13420
DNA repair and recombination proteins [BR:
dfc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DFI_13420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
ASN81854
UniProt:
A0A221SYY8
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All DBs
Position
complement(2747215..2748255)
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AA seq
346 aa
AA seq
DB search
MPSRTELLAAEYLRREGHDPKAFRYFTPDGREYRNRAGLARIAALAVPPAYQDVYVSPDP
DAELQAFGRDAAGRLQYRYHPDFVQAGALKKWQRLSRFAGVLPDLRAATTADLRSAGLPP
RKVTALMTRLLHVARFRVGSDAYAQHNRTYGLSTLRQRHVVVEGSTVTFRFRGKHGISQH
KATTDRTLAANISKLLELPGPWLFQAADDAAGGRRRVRAPELNTYLREVIGPFTAKDFRT
WGGTLLAAEFLAEAGTADTERSAKRTLVECVKYVADDLGNTPAVTRGSYICPVIFDRYLD
GKVLDDYEPRTARQEAALDGLTRSEAALKRMLDSERALRTRARKAA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcccgcactgaactgctggccgcggagtacctgcgccgcgagggccacgacccg
aaagccttccggtacttcacgccggacggccgggagtaccgcaaccgcgcgggcctggcg
cgcatcgcggcgctggccgtgccgcccgcttaccaggacgtgtacgtgtcacccgacccg
gacgcggaactgcaggccttcgggcgggacgccgcaggccggttgcagtaccgctaccac
ccggatttcgtgcaggccggcgcgctgaagaaatggcagcggctctcgcggttcgccggg
gtgctgccggacctgcgggcggctaccacggcggatctccgttcggcgggcctgccccca
cgcaaggtcacggccctgatgacgcggctgctgcacgtggcccgtttccgggtgggcagc
gacgcgtacgcccagcacaaccgcacgtacggcctgagcaccctgcggcagcggcacgtg
gtcgtggagggcagcaccgtcacgttccggttccggggcaagcacggcatctcgcagcac
aaggcgaccaccgaccgcacgctcgccgcgaacatctcgaaactgctggaactgccgggc
ccgtggctgttccaggcggcggacgacgcggccggcgggcggcgccgcgtgcgcgccccg
gagctgaacacctacctgcgcgaggtgatcgggccgttcaccgcgaaggacttccgcacc
tggggcggcacgctgctggccgccgagttcctcgcggaggccggcaccgcggacaccgag
cgcagcgcgaagcgcaccctggtcgagtgcgtgaagtacgtggccgacgacctgggcaac
accccggccgtcacgcgcggcagctacatctgcccggtgatcttcgaccggtacctggac
ggcaaagtcctcgacgattacgagccgcgcaccgcccggcaggaagcggccctggacggc
ctgacccgcagcgaggcggccctgaaacgcatgctggacagcgaacgcgccctgcggacc
cgggcccggaaggccgcgtga
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