Desulfurococcus amylolyticus DSM 16532: Desfe_0038
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Entry
Desfe_0038 CDS
T02136
Name
(GenBank) RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)
KO
K07573
exosome complex component CSL4
Organism
dfd
Desulfurococcus amylolyticus DSM 16532
Pathway
dfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desfe_0038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfd03019
]
Desfe_0038
Messenger RNA biogenesis [BR:
dfd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Desfe_0038
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Desfe_0038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Auto_anti-p27
Prok-RING_1
S1
FtrD-like
Zn_ribbon_RPB9
Zn_ribbon_NUD
A2L_zn_ribbon
GerPE
DZR_2
C1_1
Motif
Other DBs
NCBI-ProteinID:
AFL65951
UniProt:
I3XPS7
LinkDB
All DBs
Position
35956..36486
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AA seq
176 aa
AA seq
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MPGEPLAVEEEALPLQGAYIDEKGLVRSQVFGLKVFDRYKKQVYVRQVKNIELIKPGTIV
EAYVEAVTDELAFLKIYSVEGQRVEASGIIHVSQASNEFTQSLLGAIRPGDFVKAKVLNN
SIPYQLTIKEPGLGVIEAYCSVCGSPLYKSNDKLVCNTCGNIEKRKTSLNYIHVSR
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcgaaccacttgcagtagaggaggaggcactacctctccaaggtgcatacatt
gatgaaaaaggcttggtcaggtcccaggtattcgggttaaaggtcttcgatagatataag
aagcaagtatatgttagacaagtgaaaaacatagagttgattaagccgggaaccattgtc
gaagcatatgtcgaggccgtgactgatgagctggcttttctaaagatatatagtgtagaa
gggcaaagggttgaagcctccgggattatacatgtatcgcaggcatccaatgagtttaca
cagagccttctaggagccattagacccggtgacttcgttaaggctaaggtgctcaataat
tctataccgtaccaattaaccattaaggaaccagggttaggcgttatagaggcgtattgc
agtgtatgtggctccccgctctacaagagcaatgataaattagtgtgtaatacatgcggg
aatattgagaaacgtaaaaccagtttaaactatatacatgtctcaaggtga
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