Desulfurococcus amylolyticus DSM 16532: Desfe_1220
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Entry
Desfe_1220 CDS
T02136
Name
(GenBank) LSU ribosomal protein L24A
KO
K15172
transcription elongation factor SPT5
Organism
dfd
Desulfurococcus amylolyticus DSM 16532
Pathway
dfd03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
dfd00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
Desfe_1220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfd03021
]
Desfe_1220
03019 Messenger RNA biogenesis [BR:
dfd03019
]
Desfe_1220
Transcription machinery [BR:
dfd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
Desfe_1220
RNA polymerase I system
Desfe_1220
Messenger RNA biogenesis [BR:
dfd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
Desfe_1220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW
SH3_KIN17_C
NusG
KOW2_Spt5
KOW4_SPT5
Motif
Other DBs
NCBI-ProteinID:
AFL67090
UniProt:
I3XT16
LinkDB
All DBs
Position
complement(1163874..1164374)
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AA seq
166 aa
AA seq
DB search
MIALNESQESSGGAAKIYAVKTTLGRELDTALIISMRIDEMRARGEETSIGSIIIPPNVR
GYVFIEVERLGELYKVISDIRYVKAGRPIKVSYEELEKLLKPKPVIEELNVGDEVEITRG
PFRGMRARIAGIDRNKNMLTVNILEAAFTIPITIPGDYVKKISKGV
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgccttgaatgaatcacaggagtccagtgggggcgcggcgaagatatatgcggtg
aaaacaacactgggtagagaactggatactgctttaattataagtatgaggattgatgag
atgcgggcgaggggagaggaaaccagtattggaagcatcattatacctccaaatgtaagg
ggctacgtgttcatcgaggttgagaggctaggcgagctctacaaggtcatctccgatatc
aggtatgttaaagccggtaggccgattaaggtgtcctatgaggaactcgagaagcttttg
aagcctaaaccagttatagaggaacttaacgtgggtgatgaagtagagatcacgagaggc
cccttcaggggtatgcgtgccaggatagcgggcatagatagaaataaaaacatgcttaca
gtgaatattttagaggccgctttcacaatacctattacaataccaggtgattatgttaag
aagataagtaagggtgtatag
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