Desulfurococcus amylolyticus DSM 16532: Desfe_1313
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Entry
Desfe_1313 CDS
T02136
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dfd
Desulfurococcus amylolyticus DSM 16532
Brite
KEGG Orthology (KO) [BR:
dfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dfd03016
]
Desfe_1313
Enzymes [BR:
dfd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Desfe_1313
Transfer RNA biogenesis [BR:
dfd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Desfe_1313
Prokaryotic type
tRNA splicing ligases
Desfe_1313
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AFL67180
UniProt:
I3XTA6
LinkDB
All DBs
Position
complement(1236849..1238297)
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AA seq
482 aa
AA seq
DB search
MTRISLEKISEYEWKIPRKYKPCMKTDAVVFADEYLLDKMESDLTLEQAANVACLPGIRL
YSYVMPDGHQGYGFPIGGVAGFDIEEGVISPGGVGYDINCGVRVLRTELDIEDVKPRLKD
LVEVLFRNVPSGVGSTGHLRLSFNELDDVLNRGVEWAVEAGFGWKKDLEHIEENGRMKSA
DASKVSKVAKERGHEQLGTLGAGNHFLEIQVVEEIYDPEAAKVMGITRIGQVTLMIHTGS
RGLGHQVASDYLMIMERAMRKYGIQVPDRELAALPFQSNEAQDYFKAMSAAANFAWANRQ
IITHWTRESFKQVFKKDAETLGIEIIYDVAHNIAKIEEHVVNGERYKVVVHRKGATRAFP
PGHPDIPGDYKSIGQPVLIPGSMGTASYILLGTESGARTWYSAPHGAGRWLSRGDAIRSY
SPDKVVDELSRKGVVLKAATRRVISEEAPGAYKDVDRVVLVAQKVGIARPIVKMRPIGVV
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgactaggataagtcttgagaaaataagcgagtatgagtggaagatacctaggaagtat
aagccctgtatgaagactgatgctgtggtcttcgcggatgaatacctgctcgataaaatg
gagagcgatttaactttagagcaagcggcaaatgttgcatgcctgccaggtataaggcta
tactcgtatgtgatgcccgatggacaccagggctacgggttcccaatagggggagtagca
ggcttcgacatcgaagaaggtgtgataagtcctggaggagtcggatacgatattaattgt
ggagtaagagtgttaaggaccgagttagatatagaagatgttaaaccccgcttaaaagat
ctcgttgaagtgttatttaggaatgtaccaagcggtgtcggctccacggggcatttaagg
ctgagctttaacgagctcgacgacgtgttaaataggggtgttgaatgggctgtagaagcc
gggtttgggtggaagaaggatttagaacacatcgaggaaaacggtaggatgaagagtgct
gatgccagcaaggtgagtaaggtagccaaggagagaggtcatgaacaactgggcacactt
ggcgcgggcaatcacttcctcgagatacaggtggttgaggagatatatgatcccgaggcc
gctaaggtgatgggtataacgagaatagggcaggtcacattaatgatccatactggtagc
aggggtcttgggcatcaggtggcaagtgattacttgatgataatggagagggcgatgagg
aagtatggtatacaggtacctgatagagagctcgcagcactaccatttcaatccaatgag
gcacaggactactttaaagccatgtcggctgcagcgaacttcgcctgggctaacaggcag
attataacgcattggacaagggagagctttaagcaagtgttcaagaaggatgcggagacc
cttggaatagaaataatatatgatgtagcacataacattgctaagattgaggaacatgtt
gtaaatggtgagagatacaaggtagtggtacacaggaaaggagctacaagggcgtttcca
cccggtcaccccgatatacctggcgattacaagtctataggtcagcctgtgttgataccg
ggtagcatgggtactgcaagctacatactcctgggtacagagagtggggcaaggacatgg
tatagtgctccacatggggcgggtagatggcttagccgtggagatgccatcagatcctat
agcccagataaagtagtagatgagttgagcaggaagggagtagtattgaaggcggctact
aggagagttataagtgaggaggcccccggggcatacaaggatgttgacagggttgtatta
gtagcacaaaaagtagggattgcaaggcccatcgtgaagatgcgtccaataggtgttgta
aaaggataa
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