Desulfurococcus amylolyticus DSM 16532: Desfe_1419
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Entry
Desfe_1419 CDS
T02136
Name
(GenBank) exosome complex exonuclease 1
KO
K11600
exosome complex component RRP41
Organism
dfd
Desulfurococcus amylolyticus DSM 16532
Pathway
dfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desfe_1419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfd03019
]
Desfe_1419
Messenger RNA biogenesis [BR:
dfd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Desfe_1419
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Desfe_1419
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AFL67284
UniProt:
I3XTL0
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All DBs
Position
complement(1341542..1342270)
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AA seq
242 aa
AA seq
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MSGKPVLIRDGLRIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALP
KHISLPDRAILRVRYHMAPFSTTERKSPAPSRREIELSKVIREALESVVFTSQFPRASID
VFIEILQADGGTRTTGLTAASLALADAGIPMRDLVIGVAVGKVDGVLVLDINELEDKYGE
ADLPVGIMPNTGEIVLLQLNGVLTPGEFKQALDMAYKGVEQIYKTAKEAMYRKYYKIFEE
VR
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaaaacctgtattaatcagagatgggttaagaatagatgggagaaaaccggag
gaactacgcccggttagaatagcgttaggagtcttgaaaaatgctaatggaagcgcattg
gttgagtatggtaatacgaaggccttggctgcagtatatggtccacgggaagcactgccg
aagcatataagtctaccagatagggcaatactcagagtaagatatcatatggcacctttc
tctacgacagagcgtaaatcacctgctccttccagaagggaaatcgagttatccaaggtt
atacgtgaagcacttgaatcagtcgtttttacatcacagtttccaagagccagtatagat
gtattcatagagatcctccaagccgatggagggacacgtacaaccgggctaaccgctgct
tcactagcactagctgacgcagggatacctatgagagatttagtcataggtgttgcagta
gggaaagttgatggagtactggtactagacataaatgagctggaggataagtacggtgaa
gcggatcttccagtaggcatcatgccgaatactggcgagatagttttactacagttaaac
ggcgtcttaacccctggagaattcaagcaggcactagacatggcttacaaaggagtcgaa
caaatctataaaaccgcgaaggaggcaatgtaccgtaagtattacaagatatttgaggag
gtgagatag
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