Desulfurococcus amylolyticus DSM 16532: Desfe_1420
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Entry
Desfe_1420 CDS
T02136
Name
(GenBank) Exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
dfd
Desulfurococcus amylolyticus DSM 16532
Pathway
dfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desfe_1420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfd03019
]
Desfe_1420
Messenger RNA biogenesis [BR:
dfd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Desfe_1420
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Desfe_1420
BRITE hierarchy
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Ortholog
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Gene cluster
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Motif
Pfam:
RRP40_S1
KH_6
ECR1_N_2
RRP4_S1
KH_1
KH_2
Motif
Other DBs
NCBI-ProteinID:
AFL67285
UniProt:
I3XTL1
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All DBs
Position
complement(1342267..1342986)
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AA seq
239 aa
AA seq
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MKVLVADRQLVRPGDCLAILEEGFISNEIKRYPDKHIYVLDNKVYSDVLGIVYIEDKDIN
VIPLESVYYPRKDDTVIGIVDSIGVTSWSIDIRAPYKAILPGSDVIEGFNPITHNLRNYL
DTGDLILAKIAVFDRTRDPVLTTKGKGLGKILEGVVVEVKPSKVARLVGKKGSMYNLLSS
KSGCDITIAQNGYILLKCKDEYVTKVLIEAIRLIELKAHMRGLTEEVRVFLESKLGEGK
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttctagtagctgatagacagttggtgagaccgggagattgcctcgcgatactt
gaggaaggttttatctcaaatgagatcaagaggtacccggataaacacatatatgttcta
gacaataaggtatatagcgatgtactcggcatagtctacattgaggataaagacatcaat
gtcataccacttgaaagcgtttactacccaaggaaagatgatacagttatagggatcgta
gatagtataggcgtaacctcgtggagcatagatatacgtgcaccatacaaggcgatcctg
cccggttcagatgttatcgagggattcaaccctataactcataacttgaggaactacctg
gatacaggtgatttaatcctggcgaaaatagcggtcttcgatagaaccagagacccagtg
ctaactacgaagggtaaaggattagggaaaatacttgaaggggtagttgtcgaggttaag
ccgagtaaagtagctaggctggtgggtaagaagggtagtatgtataatctactatcgagt
aaaagcggctgtgatataacgattgcacagaacgggtacatattgctaaaatgcaaggat
gaatatgttaccaaagttttaatagaggcgataagactcattgagttaaaagcacatatg
cgtggtctaaccgaggaagtaagagtatttctagaatccaagcttggtgaaggcaaatga
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