Dyadobacter fermentans: Dfer_0202
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Entry
Dfer_0202 CDS
T00970
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dfe
Dyadobacter fermentans
Pathway
dfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dfer_0202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfe03019
]
Dfer_0202
03009 Ribosome biogenesis [BR:
dfe03009
]
Dfer_0202
Enzymes [BR:
dfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dfer_0202
Messenger RNA biogenesis [BR:
dfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dfer_0202
Ribosome biogenesis [BR:
dfe03009
]
Prokaryotic type
rRNA helicases
Dfer_0202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
Cas3-like_C_2
UBA_7
Rep_fac_C
UBA_DHX29
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACT91473
UniProt:
C6VX00
LinkDB
All DBs
Position
complement(227875..229647)
Genome browser
AA seq
590 aa
AA seq
DB search
MTTETFQTFEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAA
FGIPVLERIDTSSNAVQALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQI
RSLKKGVHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPE
DRQTILFSATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRL
IDMHHIKSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTIL
VATDVAARGIDVSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKS
IESYTKVKIEKGVIPSFEDIVGVRKARFVENISNSIKESNDEELYNDVLEMLHHSGFSTE
QIVGAMAKQIMGVQKNEYSDSNLAWEERRSERREGGNDRFGRGERREGGRFGDRREGGSR
FGSDRGGDRYAPRGERGDRGGDRGERRQSAPEAGMTRLFLSLGRKDHIMPKDIVGAIAGE
ANIPGKTIGAIDIYDKFTFVDVPERDARAVLRAMDGNTIKGKPVQIDIAK
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgactactgaaacttttcaaactttcgaagagcttggactcaacgaaaacatcctgaaa
gccttgcaagaaatgggttttgaaaaaccctcaccgatacaggcacagggaatcccggca
gttttgcagggctctgacgtaattggtcaggctcaaaccggtaccggtaaaactgcggca
ttcggtattcccgtgctggaaagaatagatacatccagtaatgcagtacaagccctgatc
ctctgccctacccgcgaactcgcggtgcaggtttcggaagaactcggccgtctgtccaaa
tttatgcgtggcgtgcgcatcgaagccatctacggtggtgactcgatcgaccgtcagatc
cgctccctgaaaaaaggtgtacacatcgttgtaggaactccgggccgtgtaatggaccac
atggagcgccgcaccctgaaattcgacgaagtacgcatgatggtactcgatgaggctgac
gaaatgctcgatatgggcttccgtgaggacatcgagagcatcctggccgacatgccggaa
gatcgccagacgatccttttctcggcaaccatgtcgaagccgatcatgtcgatcaccaag
cgctttttgaacgaccctaccttaattaaggtagttcgcaacgagctgaccaaccagaat
atcgagcaggtttactttgaagtaaaaccacaggcgaaagtcgaagtaatgacccggctg
atcgatatgcaccacattaagtccctgctggttttttgtaataccaaacgcaaggtggac
gagattgtggaagacctgcaattgcgtggttacgcttcggaaggtatccacggagacctc
cgccagcagcagcgcagcaatgttatgagcaaattcaaggcgggtgttactactatcctg
gttgctactgacgttgcagcacgcggtatcgacgtaagcggactggatggcgtgatcaac
tacgacattccgatggacgaagaatattacgtacaccggatcggccgtacggggcgtgcg
ggaatgtcgggtaaggcgttctcactcgttgcccgtgacgaaaaataccgtctgaaatcc
attgaaagctataccaaggttaaaatcgagaaaggggtaattccttcattcgaagatatc
gtaggtgttcgtaaggcacgttttgtggagaatatttcaaactccatcaaagaaagcaac
gacgaagaactgtacaacgacgtacttgaaatgctgcaccacagcggtttctcaaccgag
caaatcgtaggcgcaatggcgaagcagatcatgggcgttcagaaaaacgaatactccgac
agcaacctcgcatgggaagagcgtcgcagcgaacgtcgcgaaggcggtaacgaccgcttc
ggtcgtggcgaacgtcgtgaaggcggccgtttcggtgatcgtcgcgaaggcggaagccgt
ttcggcagtgaccgcggaggcgaccgttatgcaccgcgtggcgagcgtggcgacagaggt
ggtgaccgcggagagcgccgtcagtcggcccccgaagctggtatgacccgcttgttcctg
agcttgggccgtaaagaccacatcatgccgaaagacatcgtgggtgctattgccggcgaa
gccaacattccgggcaaaaccatcggtgcgatcgacatttacgacaaattcactttcgta
gacgtacctgagcgcgatgcacgcgcggtattgcgtgcgatggatggcaacaccatcaaa
ggcaagccggtgcagatcgacattgcaaaataa
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integrated database retrieval system
