Dyadobacter fermentans: Dfer_0930
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Entry
Dfer_0930 CDS
T00970
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dfe
Dyadobacter fermentans
Pathway
dfe03420
Nucleotide excision repair
dfe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dfer_0930
03430 Mismatch repair
Dfer_0930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfe03400
]
Dfer_0930
Enzymes [BR:
dfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dfer_0930
DNA repair and recombination proteins [BR:
dfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dfer_0930
MMR (mismatch excision repair)
Other MMR factors
Dfer_0930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
Cas_Cas4
AAA_12
DUF5497
TniQ
Motif
Other DBs
NCBI-ProteinID:
ACT92183
UniProt:
C6W379
LinkDB
All DBs
Position
complement(1085163..1087961)
Genome browser
AA seq
932 aa
AA seq
DB search
MLNFTPDQQRAISENDKNLRIIACAGSGKTSTVAAKITHLLLGENNAAVEPRNIIAFTYT
EKAAAELRNKVLKTIKEDDRLKNVQAIADMYIGTIHGWCLKALQENEYQYQKFSVLDDIK
LRLFVDKNYKKIGMSDVTKVSNDDITMQIFVDTKRFIQLMNVIRESELDGELPSHIVLAK
QKYEGLLKENCYFDFTMIMTEAIDKLQEKRDLYNKIKKDLKYLIVDEYQDINPIQGILIN
QLYQVAKPVITVVGDDDQNIYQWRGSNSSFIKDFLHDYEPAHEIILDRNFRSSKGVTALA
ETIISRNDRIPKSMISAEKQTFSKNNDVLYNEFVSTVEENGTIAQMIVDLRGTPFKSNVT
DPNEPERGLDYSDFAILLRTWSKTAGIVNELEKLDIPYITAGVNQLFSVNEVKAAYGIFQ
YLNKSISAEELLQLWIQIRNSNFASNNLLLGIEYLNSKFPEKQVDRNGKAIWAFSLQQIY
WDFLEKSQINEEAFQSQHIAEIVMYNLGKFSQVINDFEEIYFNSSVPSYHLFSFLQFIRY
AAADHYPEGWLNNPFRAPNAVQIMTIHQAKGLEFPVVFIPGLNKNYMPAKKVGGLTEWHF
LNPALIKNQQRYIGSEEDERRLFYVAITRAQKFLFISRAPDENNQLYRKASQFVSELAES
DAIVTNLPPFEKNLKIEASPKKEAVSITLNFSVLKDFFECQYRFKLVSMYNFSYPLDQRM
GFGRSLHNTLMEIHKRSKLGEELSQDDVLDIANGQSHFPYLGKSTILEQMKDLVKERVAE
YYKRNKDSFKNIEYVEQEIQLNLDNGILVTGKIDLIRRKLYEDKYETTIIEFKSKQDVQN
QKITYDQLNLYALGHKELTGQTADYIQIYDLEYNTQLPPKSLREDNLEETNSRIQNAAAV
IRSQTFSRIDKKEVCKDCLQYHICHSGIKYNS
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgctaaattttactccagatcagcaacgtgccatcagcgagaatgacaaaaatcttcgg
attattgcctgtgccggttcaggaaaaacaagtaccgtagctgccaaaataactcatttg
ctgcttggtgaaaataatgcagcggttgaacctcgaaatataattgcttttacatatacg
gaaaaggcggcagccgagcttagaaataaggtcctgaaaacgataaaagaggatgatcga
ttaaaaaacgttcaagcaattgctgatatgtatattggcactatacatggatggtgtttg
aaagcactgcaggagaatgaataccagtatcaaaagtttagtgttctagacgatattaag
ctcagactttttgtagataaaaactataaaaaaatcggcatgagcgatgtgacaaaggtg
agcaatgatgatatcactatgcagatctttgtcgatactaaaagatttatccagctgatg
aatgttatcagagagtcagaacttgatggtgagttgccttcacatattgtattagctaaa
cagaagtacgaaggtctattgaaggaaaactgctattttgattttactatgataatgacg
gaggcaattgataaactccaagaaaagagggatttatacaataaaatcaaaaaggatctt
aagtatttgattgttgacgaatatcaagatatcaatcctatacagggaattctaatcaat
caattataccaggttgctaaacctgtcattaccgtcgtgggggatgacgaccaaaatatt
taccaatggcgtggaagtaacagcagttttatcaaagattttttacatgactatgagccg
gcgcatgagataatattagatagaaatttccggagctcgaaaggcgtcactgcattagct
gaaacaatcatttcgcgcaacgatagaatcccaaaatcaatgatatcagcagagaagcaa
acatttagtaaaaataacgatgttttgtataatgagtttgtgtccacagttgaagagaat
ggtacaatagcacaaatgatagtcgatttgagaggaaccccattcaaatcgaatgtaact
gacccaaacgagccagaacgtggattggattattcggattttgcaattcttttacgaact
tggagtaaaacagcggggattgtcaatgagttggaaaagcttgatattccatacataact
gcgggggtgaatcaattgttttctgtcaacgaggtgaaagcggcatatggaatctttcaa
tatcttaataagagtatttcggccgaagagttattgcaattgtggattcaaatacggaat
agtaactttgcttcaaataatttgctgctgggaatcgaatacttaaatagtaaattccca
gaaaagcaggttgatagaaatggaaaagcaatatgggcttttagtttacaacaaatatat
tgggattttttagagaaatctcagattaatgaggaagcatttcagtcacagcacattgct
gagattgttatgtataatcttggtaaatttagtcaggtaattaacgatttcgaagagatt
tatttcaattcgtcagttccatcgtatcatttgttctcttttttgcaatttattcgatat
gctgcggcagatcactatcctgagggttggctaaacaatccattcagagcaccaaatgcc
gtccaaataatgaccatccatcaggcaaaaggcttagagtttcctgttgtctttattcct
ggactaaacaaaaattatatgcctgcaaagaaagtgggtgggcttaccgaatggcatttc
ttgaacccagctcttataaagaatcaacagagatacatcggtagtgaggaagatgaaaga
cggctattctatgttgccattacccgcgcccaaaagttcttatttatttctcgtgcacct
gatgaaaacaatcagctatatagaaaagcatcgcaatttgtgagtgagcttgcagaatca
gacgcaattgtaacgaatcttccgccatttgagaagaatttgaagatagaagctagtcct
aagaaggaagcagtgtcgattacactaaatttcagcgttttaaaagacttctttgaatgt
cagtacagatttaaactggtatcgatgtataatttttcctatccattggaccagcgcatg
ggtttcggcagatcgcttcataacactttgatggaaatacacaagcgtagtaagcttgga
gaggagttgtctcaggatgacgtgttggatattgcaaatgggcagtctcactttccctat
ctaggcaaatctaccattctcgaacagatgaaagatttggttaaagagagggtggcagag
tattacaaaaggaataaggattccttcaagaatatagaatatgttgagcaggagatacag
ctgaacttggataacggtattttagtaactggaaaaattgatctaatacgaagaaaatta
tacgaagataagtatgagacaactataattgaattcaaatccaagcaagatgttcaaaac
caaaaaataacttatgatcaattaaatctttatgctcttgggcacaaagaacttacaggc
cagacagcagattacattcaaatatatgatttggagtataacactcaattgccgcccaaa
tcactaagggaggataatcttgaagaaacaaacagcagaattcagaatgctgccgcggta
ataagaagccaaacgtttagtaggatcgataaaaaggaagtatgcaaagattgtttacaa
tatcatatttgccattctggaatcaaatataattcttag
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