Dyadobacter fermentans: Dfer_3080
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Entry
Dfer_3080 CDS
T00970
Name
(GenBank) type III restriction protein res subunit
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
dfe
Dyadobacter fermentans
Brite
KEGG Orthology (KO) [BR:
dfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dfe03009
]
Dfer_3080
03012 Translation factors [BR:
dfe03012
]
Dfer_3080
Enzymes [BR:
dfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Dfer_3080
5.6.2.5 RNA 5'-3' helicase
Dfer_3080
Ribosome biogenesis [BR:
dfe03009
]
Eukaryotic type
Other ribosome biogenesis factors
Dfer_3080
Translation factors [BR:
dfe03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
Dfer_3080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
ResIII
AAA_19
Viral_helicase1
SLFN-g3_helicase
DEAD
UvrD-helicase
AAA_22
PhoH
Helicase_RecD
AAA_25
T2SSE
AAA_16
UvrD_C_2
Herpes_ori_bp
nSTAND3
PIF1
SNF2-rel_dom
AAA_24
AAA_14
Vma12
UvrD_C
HEM4
AAA
ATPase_2
AAA_5
DAP3
NPHP3_N
AAA_7
TraI_hel_assoc_N
ATPase
DUF6002
GpA_ATPase
OmpH
Flavi_DEAD
IglC
Motif
Other DBs
NCBI-ProteinID:
ACT94295
UniProt:
C6W6F5
LinkDB
All DBs
Position
complement(3768220..3770130)
Genome browser
AA seq
636 aa
AA seq
DB search
MDYFKRLLELLKIEREEDKQSYQRLIERSSVSERRANGLAWYPIAIRGQEMSRGDYLTVE
VERTTHQEVPHQLRFGMPAVLFSNHEPKKDRVEGVVSHQGGNRLKITLRTDELPEWSRDG
KLGIDLLFDDNSYDEMQSALKTADSLGSSDKEGHLIKVLTGEKAPSFDKDIYPITLPKLN
PSQQRAVQNILSAQELAIVHGPPGTGKTTTLVQAIKALVKKDNRPILVVAPSNTAVDLLS
EKLSEEGLNVLRVGNPVRVSERLTALTLDSKMSSHASVKDIKTLKKQANEYKNMAHKYKR
HFGKAERDQRKALFDEAHRIMKDVANMEQYIIDDLLTKTQVVTATLVGSNHFTVRNMKYR
TVVIDEAGQALEPACWIPILKAEKVVFAGDHLQLPPTIKSEEAAKGGLSTTLLEKCVALH
PESVVLLEEQYRMNEAIMGYSSKVFYHDKLKAHESVAGRVLFPGEAPLAFVDTAGCGFDD
KLEGTSSTNPEEAAFLFKHLTQLAAEFAKVNPKPESFPSIAIISPYKEQINILKNLLAHA
PHLQLYLDKIAVNTIDSFQGQERDVVYISMTRNNIEGQIGFLADIRRMNVAMTRARKKLV
VIGDSATLSVLPFYENFIAYAQGLNAYQSAWEFSDL
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggattacttcaagcgactactcgaattactgaaaatagaaagggaggaagacaagcaa
tcgtaccagcgattgatcgaacgctcgtctgtctccgaacgccgcgccaacggactggcc
tggtaccccattgccatccgcggccaggaaatgagccgcggcgactacctcaccgtagaa
gtggaacgcaccacgcaccaggaggtgccgcaccagctgcgctttggcatgcccgcggtt
ttgttcagcaatcatgaacctaaaaaagaccgtgtagaaggcgtagtttcgcaccagggc
ggcaaccggctgaaaatcacgctgcgcacggatgaattgcccgaatggtcgcgcgatggc
aagctgggcattgatttgctcttcgacgataatagttatgatgaaatgcaatccgcattg
aaaacggcggattcgctgggttcgtcggacaaagaagggcatttgatcaaagtgcttacc
ggcgagaaggcaccttcatttgacaaggacatttatcccattacgcttcccaaactgaac
ccatcgcagcagcgggcggtgcagaatatcctttccgcacaggagctggcgatcgtgcac
gggcctccgggcacgggcaagaccaccacgctggtgcaggcgatcaaggcattggtcaaa
aaggataaccggcccatcctggtggtggcgccgagcaacacggcggtggatttgctgagt
gaaaaactgagtgaagaaggcctgaacgtgctccgcgtgggtaacccggtccgcgtttca
gaacgacttacggcgctgactttggacagcaaaatgtcctcacacgcgagcgtgaaggac
attaagacattgaaaaagcaggccaacgaatacaaaaacatggcgcacaaatacaagcgc
catttcgggaaagccgagcgggaccagcggaaggcattgttcgacgaggcgcaccgcatt
atgaaggacgtcgcgaatatggagcaatacattatcgacgacctgctcaccaaaacgcag
gtggtaacggccacgctcgtgggctccaaccacttcaccgtccgcaatatgaaataccgc
accgtggtgatcgacgaggccgggcaggcattggagccagcctgctggataccgatcctc
aaagccgaaaaagtggtctttgccggtgaccatttgcagctgccgccgaccatcaagtcg
gaagaggcggcgaagggcgggctcagcaccacattattggaaaaatgcgtggcattgcac
cccgaatcggtggtgctgctggaagaacaataccggatgaatgaggcgattatgggttat
tcttccaaagtcttttatcatgacaaactcaaagcgcatgaatcggtggcgggccgtgtg
ctgttcccgggcgaggcgcccctggcatttgtcgatacggcgggctgcgggtttgatgat
aaactggaagggaccagctctaccaaccccgaagaagccgctttcctcttcaagcatttg
acccagctcgctgcggaatttgcaaaggttaacccaaaaccggaaagctttccgagcatt
gctattatctcgccttacaaagagcagatcaacatcctcaaaaacctgctcgcgcacgcg
ccccacttgcaactttacctggacaagatagccgtcaacaccatcgacagcttccagggg
caggagcgggatgtggtgtatatcagcatgacccgaaacaatatcgaagggcaaatcggc
ttcctggccgacattcgccgcatgaacgtggccatgacccgcgcacgcaagaagctcgtc
gtgatcggcgacagcgccacactttcggtgttgccgttttatgaaaatttcattgcctat
gcccaggggctgaatgcctaccagagtgcctgggagttttcggatttataa
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integrated database retrieval system
