Dyadobacter fermentans: Dfer_3377
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Entry
Dfer_3377 CDS
T00970
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dfe
Dyadobacter fermentans
Pathway
dfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Dfer_3377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfe03400
]
Dfer_3377
Enzymes [BR:
dfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dfer_3377
DNA repair and recombination proteins [BR:
dfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Dfer_3377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
ResIII
PriA_C
Helicase_C
Zn_ribbon_PriA
nSTAND3
PIF1
AAA_30
Zn_ribbon_3
AAA_11
TrwB_AAD_bind
AAA_16
AAA_19
Castor_Poll_mid
TsaE
CHDII_SANT-like
NPHP3_N
AAA_22
DUF4796_N
HypA
zf-IS66
DUF7130
Motif
Other DBs
NCBI-ProteinID:
ACT94587
UniProt:
C6VSU2
LinkDB
All DBs
Position
4131591..4134086
Genome browser
AA seq
831 aa
AA seq
DB search
MTSLFEEEITLFADLILPVPIPNLFTYRVPREMASLIKVGARVIVQFGQKRVITAVVAQL
HSNPPVKYQAKYILELLDEQPIVTQQQLELFAWVAEYYLCNIGEVMNVALPAGLKITSQS
RIQLNPEFEHEDLLTDQEQLVVEEIKKHQTLSYEEVERLLQKSNITSIIKSLVGKRAVIL
YEEVKERYKPKVAKKIRLTAAYTTNEALSKLAADLDKTPKQQEILLKYLSFIPVYNNPEL
NYKGLDKSIFSQDDTISDASLNTLIKKGIFEQFEVFVSRFDDIPAGNMGTITLTDTQQEA
FRQIHELFAEKEVVLLHGITGSGKTEVYIELIKQALESGSQVLFLLPEIALTTQIVVRLR
KVFGDVMGIYHSKFSDNERVEVWKGILDGKFQFVVGVRSAIFLPFDNLGLVIVDEEHETS
YKQHDPAPRYNARDVAVIMSYMHKGKTLLGSATPSLESYFHAQSGRYGFVQMKQRYGNAA
LPRFELIDTKKEKRQKQMKNEFSSVLLSHLEYNLKNKEQTILFQNRRGYSPYLQCEECNW
ISECANCDVSLTYHMKARELRCHYCGHKEEVPRTCPHCGSPKVKTMGYGTEKIEEEINVM
YPEARVQRMDLDTTRAKNAYQQIISDFEEGGIDILVGTQMVSKGLDFDNVSVVGIFDADR
IIHFPEFRASERAFQMLTQVSGRAGRRADKPGKVLIQTANPSQPLLEKIINNDYEGMYEA
EIAEREKFSYPPFTRLIKVTVKHIDEGTALRAAKVLAEKLTSHLGASRVLGPQPPLVERV
RNQFLFDILIKLEREKINFKAAKSFIQEKVIDTLTDKTLKSIQVVIDVDCL
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgacctccttattcgaggaagaaatcaccctttttgccgatttgatccttccggtaccg
atcccgaacctgtttacctaccgggtgccgcgggaaatggcgtcgctgatcaaggtgggg
gcgcgggtgatcgtgcaatttgggcaaaagagggtcataacagccgtggtagcgcagctg
cattccaacccgccggtgaaataccaggcaaaatacattctggaattgctcgacgagcag
ccgattgtgacccagcagcagctcgaactctttgcctgggtggccgaatattacctctgc
aatatcggcgaagtgatgaatgtggcgctgcctgccggtttgaaaatcaccagccagtcg
cgcattcagttaaatcccgagtttgaacacgaagatttgctgaccgaccaggaacagctg
gttgtggaagagattaaaaagcatcagacgctttcgtatgaggaagtcgaaaggcttttg
caaaaatcgaatatcacttcgatcatcaaatcgctcgtcgggaagcgggcggttatttta
tatgaggaggtaaaagagcgctacaagccgaaagtggcgaaaaagatcaggctgacggcc
gcttatacgaccaacgaagcgctgtcgaagctcgccgcggacctcgacaagacgcccaag
cagcaggaaatcctgttgaaatacctcagttttatcccggtttacaacaatcctgagttg
aattataagggcctggacaaaagcattttcagtcaggacgataccatttcggatgcttct
ttgaatactctcatcaaaaagggcatttttgagcagttcgaagttttcgtctcccgcttt
gacgacattccggccggcaacatgggcaccattacgctcacggacacccagcaagaagcc
ttccgccagatccacgagctatttgcggaaaaagaagtggtgctgctgcatggcattacc
ggctcaggcaaaaccgaagtgtatatcgaactgatcaaacaagcgctcgaaagcggctct
caagtcttgtttctacttcctgaaatcgcattgaccacgcagatcgttgtgcggcttcgg
aaggttttcggcgatgtgatgggcatttaccattccaaattctcagataatgagcgcgtg
gaagtgtggaagggcattctggacggcaagttccagtttgtggtcggtgtgcgctcggcg
atattcctgccgtttgataatcttggattagttatcgtcgacgaggaacacgaaacatcc
tataaacaacacgacccggcgccgcgctacaatgcacgcgatgtagcggtgatcatgtcg
tacatgcacaaaggcaaaacgctgctcggttcagcgacgccttcgctggaaagctatttt
catgcccaaagcggccggtatggatttgtgcaaatgaagcagcgctacggaaatgcggca
ttaccgcgttttgagctgatcgacaccaagaaggaaaagcgccagaagcagatgaagaac
gagttttcttccgttctgctaagccatttggaatacaaccttaaaaacaaagagcaaacc
attctcttccagaaccgccgcggctactccccttacctgcaatgcgaggaatgcaactgg
atttcggaatgcgcgaattgcgacgtaagcctcacataccacatgaaggcgcgggagctc
cgctgccactattgcggacataaggaggaagtgccgcgcacctgcccgcattgcggctcg
ccgaaagtaaaaacgatgggttacggcacggagaagatcgaggaggaaattaatgtaatg
taccccgaggcgcgcgtgcagcgcatggacctcgacacgacgcgcgctaaaaatgcctat
cagcaaatcatttccgatttcgaggaaggcgggattgacattttggtggggacgcaaatg
gtgagcaaaggcctcgacttcgacaatgtgagcgtcgtaggcattttcgatgccgaccgc
attatccatttccccgaattccgcgcttcggaacgggcgttccaaatgctgacgcaggtg
agcgggcgcgcaggcaggcgggccgacaagccggggaaagtgctcatccaaacggccaac
ccctcgcagccgctgctcgaaaagatcattaataacgattacgagggaatgtacgaggcc
gaaatcgccgagcgcgagaaattcagctacccgccatttacccggctgatcaaggttacg
gtgaagcatatcgacgaaggaaccgccctccgcgcagccaaagtactggccgaaaaactg
acgtcgcatttgggcgccagcagggttctggggccgcagccgccgctggtcgaaagagta
agaaatcagtttttgttcgatattctcatcaaacttgaacgagaaaagattaattttaag
gcggcaaagtcatttatacaggaaaaagtaattgacactctgactgacaagacgctaaaa
agcatccaggtcgtgattgacgtggattgtttataa
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