Dyadobacter fermentans: Dfer_3448
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Entry
Dfer_3448 CDS
T00970
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dfe
Dyadobacter fermentans
Pathway
dfe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dfe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dfer_3448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfe03021
]
Dfer_3448
03400 DNA repair and recombination proteins [BR:
dfe03400
]
Dfer_3448
Enzymes [BR:
dfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dfer_3448
Transcription machinery [BR:
dfe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dfer_3448
DNA repair and recombination proteins [BR:
dfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dfer_3448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ACT94658
UniProt:
C6VT13
LinkDB
All DBs
Position
complement(4220552..4224874)
Genome browser
AA seq
1440 aa
AA seq
DB search
MSFKKNKKLNSDFSRMTISLASPESILESSFGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYLLGLSTKKLDQIIYYERYAVVQPGIKEEDGVGYLDFLTEDEYLDIVDKLPRENQLLPD
TDPNKFIAKMGADALEMLLSRIKLDELSYELRHQAATDTSQQRKAEALKRLKVVEAFRDA
NTRIENRPEWMVIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VIWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGQEAVLEASMLMLSSHNILNPANGAPITVPSQDMVLGLYYVTKGRVSTEQYPII
GEGKIFYGPDEVIIAINEGKLSKHANIKCRVRVRNEDGTFEIKLIDTVAGRILFNQAVPE
EVGYINELLTKKKLQQIIGLVFKQAGVARTAQFLDEIKELGFQMAFKGGLSMGLDDVMVP
SEKEKLIEQAKGDVENVWNNYLMGLITENERYNQVIDIWTRVNSRITETLMKQLETDKGG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNIAGGAGEIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVVVVEEDCGSLRGIAISALKDNEDI
VEPLSERILGRVSVHDVFDPLSNELILTAGQEITEEIAAYIDETAIETVEIRSVLTCETR
DGVCAKCYGRSLASAQMVNIGEAVGVIASQSIGEPGTQLTLRTFHVGGTASNISVEANIK
AKFDGLIQFEDLRLVQSVNSEGDEVTVVMGRSGEVKIVHPETKQLLISNNVPYGAHLQVK
EGDTVFKGQELCTWDPYHAVILSEFTGTVSFDAIEEGITFREEFDEQTGFQESVIIETRD
KTKNPAIVVKGKSTLLKDQTEKGYNLPVGARLVVKAGAAIKAGQPLAKIPRVVGKTRDIT
GGLPRVTELFEARNPSNPATVSEIDGVVSYGGVKRGNREIHIESKDGTQRRYMVPLSKHI
LVQDGDFVRAGDPLSDGAITPADILSIKGPTAVQEYLVNEIQEVYRLQGVKINDKHIECI
VRQMMQKVDILDAGDTNFLEMQAVDRVVFREENDKILDMKVVEDAGSSETLKPGMIVSVR
RLRDENSSLKRRDLKLVTARDAQAAVARPTLMGITQASLGTESFVSAASFQETTKVLSEA
AVRGKRDELKGLKENVIVGHLIPAGTGMRQYENLIVGSKEEFDALSDSRERQSRKKKELA
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcaaaaagaataaaaaattaaacagcgacttttccagaatgaccatcagtctg
gcgtcaccggagtctattctagaaagctccttcggtgaggtaacccagcctgaaaccatc
aactaccggacctacaagccggagatgggcggtctgttctgcgagcgcattttcggtcct
gtaaaagactgggaatgtcactgcggtaaatacaagcgcattcgctataaaggaatcatc
tgcgaccgttgcggtgtcgaggtaaccgagaaaaaggttcgccgcgagcgcatgggccac
attgaactcgtggttcctgttgcacatatctggtacttccgcagcttgccgaacaaaatc
ggttatctgttgggactttctaccaagaaactcgaccagatcatttattacgaacggtac
gcggttgttcagccaggtatcaaagaagaggacggcgttggctacctcgacttcctgacc
gaagacgaatacctcgatatcgttgacaagctcccacgcgagaaccagttgcttcctgac
acggatcccaacaaattcatcgcgaaaatgggtgccgatgcattggaaatgctgttgagc
cgcattaagctcgacgaactttcttatgaactccgtcaccaggctgctaccgacacttct
cagcaacgtaaagcggaagctttgaagcgcttgaaagtggtagaagcattccgtgatgcg
aatacccgtatcgaaaaccgccctgaatggatggtgatcaaaatggtaccggttattcca
ccagaattgcgtccattggtacccctggatggtggccgtttcgcgacttcggatttgaac
gacctttaccgtcgtgtgatcatccgtaacaaccgtctgaaacgcctcatcgagatcaag
gcacctgaggtgatcttgcgtaacgaaaagcgtatgttgcaggaagcggttgactcgctt
ttcgacaacagccggaaagtaaatgcggtacgttcggaaggtaaccgtgctttgaaatca
ctttcagacatgctgaaaggtaagcaaggccgtttccgtcagaacttgctcggtaagcgc
gttgactactctggtcgttcggttatcgtggtaggtcctgaattgaaactgcacgaatgc
ggtctgccgaaagacatggctgccgagcttttcaagccgttcatcatccgcaagctcatc
gagcgtggtattgttaaaactgtaaaatcagcgaagaagatcgtagaccgcaaggaccct
gtgatctgggatattctcgaaaacgtactgaaaggtcacccggtattgcttaaccgtgct
ccgacacttcaccgtttgggtatccaggcattccagcctaaactgatcgaaggtaaggca
atccagcttcacccattggtgtgtacggcattcaacgccgactttgacggtgaccagatg
gcggtacacgtaccactgggtcaggaagccgttttggaagcgtctatgctaatgctttcg
tcgcataacattcttaacccagccaacggtgcgccgattacggtaccatcgcaggatatg
gttttgggtctgtattatgtaacaaaaggtcgcgtaagcaccgagcaatatccgatcatc
ggagaaggcaaaatcttctacggtccagatgaggtgatcatcgcgatcaacgaaggcaaa
ttgtcgaaacatgcgaatatcaaatgccgcgttcgcgttcgtaacgaggacggtacattt
gaaattaagctgatcgacaccgttgcaggtcgtatcctgttcaaccaggctgttcctgag
gaggttggttatatcaacgaattgttgaccaagaaaaaacttcagcagatcatcggtttg
gtattcaaacaagctggtgtggcccgtacggctcaattcctggatgaaatcaaagaactc
ggtttccaaatggccttcaaaggcggtttgtcaatgggattggacgatgtaatggttcca
agtgaaaaagaaaaactcatcgagcaggcgaaaggcgatgttgaaaacgtctggaacaac
tacctgatgggtctcatcaccgagaacgaacgttacaaccaggtaatcgatatctggacg
cgcgttaactcacgcattacagagacgttgatgaagcagctggaaacagacaaaggcgga
ttcaactcaatctatatgatgatgcactccggagcccgcggttcccgtgagcagatccgt
cagttgggtggtatgaggggtcttatggccaaacctcagaaaaacatcgctggtggtgcc
ggtgaaatcatcgaaaacccgattctttctaattttaaagaaggtctcgacgttttggaa
tactttatctctacccacggtgcgcgtaaaggtttggccgataccgcgttgaaaactgcg
gatgcgggttacctgacccgtcgtttgcacgacgttgcgcaagacgtggtagtagtggaa
gaagactgcggctcgctccgtggtatagcaatctctgcgttgaaagacaatgaggatatt
gtagaaccattgtcagagcgtatcctgggtcgtgtgagcgttcatgacgtgttcgatccg
ttgagcaacgaattgatcctgactgccggccaggaaatcacagaggaaattgctgcttac
attgatgaaacagcgatcgaaactgtggaaatccgttcggtactgacttgcgaaacccgc
gacggtgtttgcgcgaaatgctacggacgcagcctggcgtctgcccagatggtaaacatc
ggtgaggcagtaggtgtaatcgcttcccagtcaatcggtgagccgggtacacagctgaca
ctccgtacattccacgtgggtggtacggcttccaacatctctgttgaagccaacatcaaa
gcgaaattcgacggtttgatccagttcgaagatcttcgtttggtacaatctgttaactca
gaaggcgacgaagtaacggtagtaatgggtcgttcaggtgaggtgaaaatcgttcaccct
gaaacgaaacaactgctgatctcgaacaatgtaccttacggtgcgcatttgcaggtgaaa
gaaggtgataccgtattcaaaggacaggaactttgtacctgggacccttaccacgcggta
atcctttcagaattcactggaacggtttccttcgacgcgatcgaagaaggtatcacattc
cgtgaagaatttgacgaacaaacaggcttccaggagtcggtgatcattgaaacgcgtgac
aaaaccaaaaacccggcgatcgtggtgaaaggtaagtctacattgttgaaagatcagact
gaaaagggctataaccttcctgttggagcgcgtctggttgtgaaggcaggtgccgctatc
aaagctggtcagccgctggcgaaaatcccacgtgtcgttggtaaaacacgcgatatcacg
ggaggtctgccacgtgtgaccgaattgttcgaagcacgtaacccgtctaaccctgcgacg
gtttctgaaatcgacggtgtggtatcttacggcggcgtgaaacgcggtaaccgtgaaatc
catatcgaatcgaaagacggaacacaacgccgttacatggtgcctttgtcgaaacacatc
cttgttcaggatggcgacttcgtacgcgccggtgacccgctttccgatggtgctatcacc
cctgcggacatcctttctatcaaaggaccaaccgccgttcaggagtacctcgtgaacgag
atccaggaagtataccgtctgcaaggtgtgaagatcaacgataaacacatcgagtgtatc
gtgcgccagatgatgcagaaagtagatatcctggacgctggtgacaccaacttccttgaa
atgcaggcagttgaccgcgtggtattccgcgaggaaaacgacaaaatcctggatatgaaa
gtggttgaggacgctggtagctccgaaacattgaagcctggtatgatcgtttcagttcgt
cgtttgcgcgatgagaattcaagcctgaaacgtcgtgacctgaaattggttactgcccgt
gacgcgcaagctgcggtagcaagaccaaccctgatgggtatcacacaagcttctttgggt
actgaaagctttgtttccgcggcttcattccaggaaacaaccaaagtattgagcgaagcg
gctgttcgtggaaaacgcgacgaactgaaaggcttgaaagagaacgtgatcgtaggtcac
ctcattccggccggtacaggtatgcgtcaatacgaaaacctgatcgttggatcgaaagaa
gaattcgatgcgctgtccgattctcgcgagagacaatcgcgcaagaaaaaggagttggcg
taa
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integrated database retrieval system
