Dyadobacter fermentans: Dfer_3602
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Entry
Dfer_3602 CDS
T00970
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dfe
Dyadobacter fermentans
Pathway
dfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dfer_3602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfe03019
]
Dfer_3602
03400 DNA repair and recombination proteins [BR:
dfe03400
]
Dfer_3602
Enzymes [BR:
dfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dfer_3602
Messenger RNA biogenesis [BR:
dfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dfer_3602
DNA repair and recombination proteins [BR:
dfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Dfer_3602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
ESCRT-II
Motif
Other DBs
NCBI-ProteinID:
ACT94809
UniProt:
C6VU41
LinkDB
All DBs
Position
complement(4399864..4402077)
Genome browser
AA seq
737 aa
AA seq
DB search
MVQQVDKVINDTLKGKLKEIFGYSQFRGDQEVIIQNILLGKNTFVIMPTGAGKSLCYQLP
ALVSDGLTIVISPLIALMKNQVDQLTAFGINAQFLNSTLTKAEMTRVKTDALDGTLKLLY
IAPESLTKEDNLDFLKRVKISFVAIDEAHCISEWGHDFRPEYRRIHGIIENIGNLPIIAL
TATATPKVQQDIRKNLQMEEAETFKSSFNRKNLYYEIRPKKDVKKQLIRYIRNNKGKSGI
VYCLSRKTVEEVAELLNVNDVRALPYHAGLDANTRMANQDAFLNEECDVIVATIAFGMGI
DKPDVRFVIHYDVPKSLEGYYQETGRAGRDGLEGNCLMFYSYDDIQKLEKFNKDKTVTER
DNARHLLNEMVAYSTLGVCRRRQLLSYFGEYLEKDCGYCDNCNKPTEKIKVQDDVILILK
SVLLTEQRFDADHIADLLTSTDNQYVKSYEHDQLDVFGKGLELNESRDYWVSAIRQLVIF
GYLEKDIENYGVIRLSEKGGRYLNDPYPVTLHKDHNFDEEEIKADDDDKESGNGNGSAHA
YDEALLGMLKALRKKVAKDKNLPPYVIFQDPSMEEMATTYPTTQQEMAQINGVGMGKVQK
FGKPFIELISRYVEENEIETAKDVVIKSTVNKSKIKIFIIQQVDRKVSLDEIAEVKDLAL
ADVIEEVEHICYSGTKLNLDYYINQVIDRERQKDIYDYFMTAETDNISTALHEFDGEEVS
EEELRLMRIKFLSELAN
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggtacagcaggttgataaagtcattaacgacacattgaaaggaaagcttaaagaaata
tttggatacagtcaattccgcggagatcaggaagttatcatacaaaatatactcttaggt
aaaaatacattcgtgattatgcccacgggcgcggggaagtcactctgctaccagcttcct
gcccttgtgagcgacggactgaccatcgttatttccccgctgatcgccctgatgaaaaac
caggtcgaccagcttaccgcgttcggtatcaatgcgcaattcctgaactccactcttacc
aaagctgaaatgacgcgcgtcaaaaccgatgcgctcgacgggactctcaaactgctctac
attgcgcctgaatcgctcacaaaagaggataacctcgattttctcaaaagggtgaaaatc
tcctttgtagccatcgacgaggcacactgtatctcggaatggggccacgatttccggccc
gaataccgtcgtattcacggcattatcgagaatatcggcaacttgcccattatcgcgctc
acggccacagcaacgccgaaagtgcagcaggatatccgcaaaaacctgcaaatggaggag
gccgaaaccttcaaatcgtcctttaaccggaaaaatctttactacgagatccgcccgaaa
aaagacgtcaaaaagcagctcatccgctatatccgtaataataaaggcaaatcgggcatt
gtatattgcctgagccgcaaaacggtggaagaggtggccgagctgctgaacgtcaacgac
gtacgtgcattaccgtatcatgccggcctcgatgccaatacccggatggcgaatcaggac
gcgttcctgaacgaggaatgtgacgtgatcgtggcgaccatcgcattcggaatgggtatc
gacaaaccggatgtgcgcttcgtgatccactacgacgtacccaagtcgctcgaaggctat
taccaggaaacaggccgcgccggccgcgacgggctggaaggcaactgtctgatgttttac
agctatgacgacattcagaagcttgaaaagttcaacaaggacaaaaccgttacagaacgc
gacaatgcacgccatttgctcaatgaaatggtcgcctattcgacattgggcgtgtgccgc
cgccgccagttgttgagctatttcggcgaatatcttgaaaaagattgcggctattgcgac
aactgcaacaagccgaccgagaagatcaaagtgcaggacgacgtgatcctgatcctcaaa
tcggtactcctcaccgaacagcgcttcgacgccgaccatattgccgacctgctcacatcc
accgataaccagtacgtaaaaagctacgaacatgaccagctcgatgtattcggcaaaggc
ctggaactgaacgaatcacgcgattactgggtgtcggcgatccgccagttggtgattttt
ggttatctggaaaaggatattgaaaactatggcgtgatcaggctgtcggaaaaaggcggc
cgttacctgaacgacccttatccggtgacgctccataaagaccataatttcgacgaggag
gagataaaagcggacgacgacgacaaagaatcgggcaacggcaatggcagcgcacatgcg
tacgacgaggcattgctcggaatgctcaaagcattgcgtaaaaaggtggccaaggataaa
aacctgccgccgtacgtgatcttccaggacccttcgatggaagaaatggcgacgacctac
ccgactacccagcaggaaatggcgcagatcaacggcgtcggaatgggcaaggtgcagaag
ttcggcaaaccattcatcgagctcatttcacggtatgtggaggaaaacgagatcgaaaca
gcgaaggacgtggtgatcaaatccacggtgaacaaatccaaaatcaagattttcatcatc
cagcaggtcgaccgcaaggtgagcctcgacgagatcgccgaagtaaaagacctcgcgctg
gccgatgtgatcgaagaagtagagcacatttgctattccggcacgaaactgaacctggat
tattacattaaccaggtaatcgaccgtgagcggcagaaggacatttacgattattttatg
acggccgagaccgacaatatctctactgccttgcatgaattcgacggcgaggaagtgagt
gaagaagaattaagactcatgcgtatcaaattcttgtcggagctggccaactag
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