Dyadobacter fermentans: Dfer_3725
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Entry
Dfer_3725 CDS
T00970
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dfe
Dyadobacter fermentans
Brite
KEGG Orthology (KO) [BR:
dfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dfe03016
]
Dfer_3725
Enzymes [BR:
dfe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Dfer_3725
Transfer RNA biogenesis [BR:
dfe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Dfer_3725
Prokaryotic type
tRNA splicing ligases
Dfer_3725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
CvfB_2nd
Motif
Other DBs
NCBI-ProteinID:
ACT94930
UniProt:
C6VVA7
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All DBs
Position
4535038..4536564
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AA seq
508 aa
AA seq
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MDTPITIEEITYLANVPEHLHAAFLRVANGLHERAKYPKEKVFLMLVKMLNDPKKYAYSK
NKLTNLAKTVYDLKKAGTEISLTDDGKELIYNEEAVLTLEEKEPARKNTFNLREDKLHYA
VFGKEQIEEGALAQMETAVSLPISVAGALMPDAHQGYGLPIGGVLATEPDKVIPYAVGVD
IACRMCMSVFDIPTDYLKREPHFLKKILTENTKFGMGGETARKYDESVMDQPEWQATKTI
RSLKDKAYRQLGTSGTGNHFVEWGIVEVFENDPLLNLPKGEYLSLLSHSGSRGFGGSVAN
YYSKLAMQKTVLPWQAAHLAWLDLNTEEGQEYWIAMNLAGDYASANHHEIHNKMAKSLGE
KPLKMIENHHNFAWKETLADGREVIVHRKGATPAGSDELGIIPGSMSQPGYVIRGKANAA
SINSASHGAGRVMSRTKALSTTTRSQMNKILQDNGIQLIGGDLDESPMVYKNIEDVIAAQ
SDLVHVLAKFSPKIVRMADANRKEGRED
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggacacacccatcacaatagaagaaatcacctatctggccaacgtgccggaacacctg
cacgccgcattcctgcgggtggcaaatggcctgcatgaacgtgcgaaatacccgaaagag
aaggtatttctgatgctcgtcaaaatgctgaacgacccgaaaaagtacgcctattccaaa
aataagctcactaatctggccaaaaccgtctatgacctcaaaaaagccggcacggaaatt
tccctgaccgacgacggcaaggagcttatctataatgaagaggcggtactcactttggaa
gaaaaagagcctgcccgaaagaacacattcaacctccgcgaggacaagctgcattacgcc
gttttcggcaaagagcagattgaggaaggtgcattggcgcaaatggaaaccgccgttagt
ttacccatatcggtcgctggcgcattaatgccggatgcccaccagggctacggattaccc
atcggcggcgtgcttgccacggaacccgataaggttatcccctacgccgtgggcgtcgac
attgcttgccgcatgtgtatgtcggtctttgacattcctaccgattacctcaaacgcgag
ccgcatttcctgaaaaagatcctcaccgaaaacaccaaattcggcatgggcggcgaaact
gcgcgcaagtacgacgaaagtgtgatggaccaacccgaatggcaagccaccaaaacgatc
cgttcgttgaaagacaaggcctaccggcagctcggcacttcgggaaccggcaaccatttt
gtagaatggggtattgtagaagtatttgaaaacgacccgcttttgaatttacccaaaggc
gaatacctgtcgcttctttcgcattccggctcgcgcggcttcggcggaagcgtggccaat
tactattccaaactggctatgcaaaagacggtgcttccatggcaagccgcgcatttagca
tggctggacttaaacaccgaagaaggccaggaatactggatcgcgatgaacctcgccggc
gactatgcctcggccaaccaccacgaaatccacaacaaaatggccaaatcactgggtgag
aagccattaaaaatgatagaaaaccaccacaacttcgcctggaaagaaaccctcgccgac
ggccgcgaagtaatcgttcatcgcaaaggcgccacgcccgccggctccgacgaactcggt
attattcccggctcgatgagtcagccggggtacgtcatccgaggcaaagctaatgccgct
tccatcaactccgcttcccacggcgccggccgcgtcatgtcgcgtacgaaggcgctttcc
accaccacccggagccagatgaataagattttgcaggacaatggcattcaactcattggc
ggcgacctcgacgaatcgccgatggtttacaagaatattgaggatgtgattgctgcgcaa
tccgacctggtgcatgtgctggcgaagttctcgcctaagattgtgcggatggcggatgcg
aatcggaaggaggggcgggaagattga
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