Dyadobacter fermentans: Dfer_3780
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Entry
Dfer_3780 CDS
T00970
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dfe
Dyadobacter fermentans
Pathway
dfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dfer_3780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfe03019
]
Dfer_3780
03400 DNA repair and recombination proteins [BR:
dfe03400
]
Dfer_3780
Enzymes [BR:
dfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dfer_3780
Messenger RNA biogenesis [BR:
dfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dfer_3780
DNA repair and recombination proteins [BR:
dfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Dfer_3780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ACT94984
UniProt:
C6VWF3
LinkDB
All DBs
Position
complement(4597518..4599446)
Genome browser
AA seq
642 aa
AA seq
DB search
MTDIRSVLKQYWGYDAFRPFQEDAIQAVLNGMDTLVLLPTGGGKSICFQVPVMASKGVCI
VVTPLIALMKDQVEQLKRRHIPAAAIHSGMSKTEIDITLDNCIHGNTKFLYVSPERLRTD
IMIARTKQMKVCLLAIDEAHCISAWGYDFRPSYLLIADFRKLLPKVPVMALTATATEEVR
ADILDKLEMRNARVFKQSFARANLSYSAFAEESKERKLLQVLRNVSGTAIVYVRTRKRTK
DLADWLSRQGISATSYHAGLLFKDRSDRQTAWIQNRVRTVVATNAFGMGIDKPDVRAVVH
FDLPDNLEAYYQEAGRAGRDEKKAYAVALFNKIDLEELVDSVERRYPPIEMLRRVYQALA
NYYKVAVGAGELSGFDFDIQEFTGIFGLPVNETHYALKLLEEEGFVQLSENFSDASKIHF
LVDNRQLYDFQIRYQELDSFIKLILRMYGGELFTEYVRISETELAQVHFATVPEVLRKLK
FLAERDIIDYEPRKDKPQLTFLTPRYDSSLLPLNVFEIQKKKDRDLQKAQAVIRYASHTK
RCRTLLLLEYFHEFDAEECGVCDICIQNRKNEARDAAEDATLAGMITDFLTREGPMLPAE
LGRAFENLPGDELFNTLQTLIREETIRYNEQGMLTATNKTQL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatccggtctgtcctgaaacaatattggggttacgacgcattcaggccattt
caggaagacgccattcaggccgtcctgaatggcatggatacgctcgtgctgctgcctacc
ggcggcggcaaatccatttgtttccaggtaccggtgatggcctccaagggtgtgtgcatt
gtggtaacgccgctgatcgcccttatgaaagaccaggtggagcagctcaaacgcaggcat
attcccgccgccgcgatccattcgggcatgagcaagaccgagatcgatattacgctggat
aattgcattcacggaaatacgaagtttctctacgtgtcgcccgagcgcctgcggacggac
attatgattgcccgcacgaagcaaatgaaggtttgcctgcttgcgatcgacgaggcgcat
tgtatttcggcctggggttacgatttccgcccctcctacctgctcatcgccgatttccgg
aagcttttacccaaagtgccggtaatggcgctcaccgccaccgctacggaagaagtgcgg
gcagacatcctcgataagctcgaaatgcgcaatgcgcgcgttttcaagcagtcgtttgca
cgtgccaacctctcctactcggcatttgcggaggaaagtaaggaacgaaaattattgcag
gttttgcgtaatgtttcgggaacggccattgtatacgttcgcacccggaagcgcaccaaa
gacctcgctgactggctctcgaggcagggaatttcggccaccagctaccacgccggactg
ctttttaaggaccgctctgaccggcaaacggcctggattcagaaccgggtgaggaccgtc
gtggccacaaatgccttcgggatggggatcgacaagcccgatgtccgcgccgtggtgcat
ttcgacctgcccgacaatctggaagcctattatcaggaagccggccgggccggaagggac
gaaaaaaaggcctatgccgtcgcattgttcaacaaaatcgacctcgaggagctcgtcgac
agcgtggagcgacgatacccgcccattgaaatgctccggcgcgtttaccaggccctggcg
aattattacaaagtggccgtcggtgcgggcgagctatcgggtttcgacttcgatatccag
gaatttacaggcatattcgggctgccggtgaatgaaacgcattatgcgttgaaactgctt
gaagaagaaggttttgtgcagctcagcgagaattttagtgatgcttccaaaatccatttt
ctggtggataaccgccaattgtacgattttcagatacgctatcaggagctggattcgttt
atcaaactgatcctgagaatgtacggcggcgagctttttacggagtatgtgcgcatttcg
gaaaccgagctggcgcaggtgcatttcgccacggtgcccgaagttctgaggaagctgaaa
ttccttgccgagcgggacattatcgattacgaaccccgcaaggacaagccccagctcaca
tttctgacaccgcgctatgattcttctttactgccgctgaatgtttttgaaatacaaaag
aaaaaggaccgcgacctgcaaaaggcacaagcggtgatccgttacgcgtcgcataccaaa
cggtgccggaccttgcttttactggaatattttcatgaattcgatgcggaggaatgcggt
gtgtgcgatatatgcattcaaaaccggaaaaatgaggcccgcgacgctgcggaggacgcc
actttggccggaatgatcaccgattttctaacccgtgagggcccgatgttgcccgctgaa
cttggccgtgcattcgaaaacctgcccggcgacgagttgttcaatacattacaaacgctg
atccgggaggaaacgatccggtataatgaacaaggaatgctcaccgcgactaacaaaact
caactttga
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