Dyadobacter fermentans: Dfer_3788
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Entry
Dfer_3788 CDS
T00970
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dfe
Dyadobacter fermentans
Pathway
dfe03420
Nucleotide excision repair
dfe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dfer_3788
03430 Mismatch repair
Dfer_3788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfe03400
]
Dfer_3788
Enzymes [BR:
dfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dfer_3788
DNA repair and recombination proteins [BR:
dfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dfer_3788
MMR (mismatch excision repair)
Other MMR factors
Dfer_3788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ACT94992
UniProt:
C6VWG1
LinkDB
All DBs
Position
complement(4608618..4610885)
Genome browser
AA seq
755 aa
AA seq
DB search
MNHNDYLSTLNEPQREAVLHGNGPLMIIAGAGSGKTRVLTYRIARLIETGVDPFRILSLT
FTNKASGEMRSRIEGAVGTEARNIWMGTFHSVFAKILRIEARYLGYTSDFSIYDTDDSKS
LLRSIIKEYNLDDKVYKANVVFNRISGAKNRLISADDYINNAIIQQDDEAAKMKEIGRLY
KTYATRCFQANAMDFDDLLFNTNVLFRDFPDVLYKYQHKFQHVMVDEFQDTNVSQYLITR
KLSAVHRNIVVVGDDAQSIYAFRGANIENILNFEKDFPDVRVIKLEQNYRSTSTIVNAAN
SVIARNKSQLEKHTFTSNEEGSLIDVIKAGSDNEEGRLIATAIFEEKMQKALRNEHFAIL
YRTNAQSRSFEEALRKLGIKYRIVGGQSFYQRKEIKDLLAYLRFTVNQRDEEAFKRIINL
PKRGIGDTTVAKIAVTASENNVAIWDVVANINQYGTGRTIAPIEGFGTLIKSFKILVEEG
KDAYEISSHIAKASGILRELYEDKTVEGLSRYENVQELLNGIKEFVDSDETEDKSLSAFL
QSVSLLTNADEPDDNNDHDRVTMMTIHSAKGLEFRNVFIVGLEEDLFPSQMMLESRQDLE
EERRLFYVAITRAEKKLSFSYAESRYQWGRLKMCEPSRFLLEVEQKYLNVNKMVQSALER
DTTPPVTTFARNLVQRKTEAKPAVTAATSHVPSADFVPTDTFDLAEGDKVEHLKFGFGVV
TKMDVNGTDRKATVKFDLVGEKTLLLSFAKLRVMK
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
ttgaaccacaacgattatctatcgaccttgaatgagcctcaacgggaggctgtgctgcac
ggaaatggccctttgatgatcattgcgggcgcgggttcggggaaaacgagggtacttacc
taccgcattgcgcggctgatcgagacgggtgtcgacccattccgcattttgtccctgaca
tttaccaataaagcatccggcgaaatgcgcagccgcatcgaaggcgccgtcggtaccgag
gcgcggaacatctggatgggtacttttcactccgttttcgccaagatactgcgcatcgaa
gcccgctacctgggctataccagcgatttctctatttatgataccgacgattcgaagtcg
ttactgagaagtattatcaaagaatataacctcgacgacaaggtttataaggccaatgta
gttttcaaccggatctccggagcgaagaaccggctcatttcggcagacgactacattaat
aatgcaatcatccagcaggacgatgaagcggcgaagatgaaggaaatcggcaggctgtac
aaaacgtacgcgacgcgctgtttccaggccaatgccatggatttcgacgacctgcttttc
aataccaacgtccttttccgcgattttcccgacgtattatataagtaccagcacaagttt
cagcatgtgatggtggatgagtttcaggatacgaacgtatctcaatatctcattaccagg
aaattatccgctgtgcaccggaatatcgtcgtcgtgggtgacgatgcgcagagtatatac
gcattccgcggcgcgaacatcgagaatatcctcaattttgaaaaggacttcccggatgtg
cgcgtgatcaagctggaacagaattaccgctcgaccagcacgatcgtgaatgcagccaat
tcggtgatcgcccgcaacaagtcgcagctcgaaaaacatacatttacttccaacgaagaa
ggttcgctgatcgacgtgatcaaggcgggttcggacaatgaggaaggccgcctcatcgcg
acggcgatttttgaagaaaaaatgcagaaagcgctgcgtaatgagcatttcgccattttg
taccgcaccaatgcacagtcgcgctcatttgaagaagcgctccggaagctcggcattaag
taccgcattgttggtggccagtcattttaccaaaggaaagaaatcaaggatttgcttgct
tacctgcggtttacagtgaaccagcgggacgaagaagctttcaaacggattattaattta
cccaaaagaggcatcggcgacaccaccgtggccaaaatcgcggtgactgcttccgaaaac
aatgtggcgatctgggatgtggtggccaatatcaatcaatatggtaccggtcgcactatc
gcacccatcgaaggctttgggacgctgatcaagagtttcaaaattttggtcgaagaaggc
aaggacgcctatgaaatttcttcccacattgccaaagcatccggcattttgcgtgaattg
tatgaagataagaccgtggaaggcctttcgcgctacgaaaacgtgcaggaattgctgaac
gggatcaaggaatttgtcgatagcgatgaaacggaggataaatcattgagtgcgttcctt
caatcggtgtcgctgttgacgaatgcggatgagccggatgataataatgaccacgaccgg
gtgacgatgatgaccattcactcggctaagggtctggaattcaggaatgtatttattgtg
ggcctggaagaagaccttttcccgagccagatgatgctcgaaagccggcaagatttggaa
gaagaaaggaggcttttctacgtggcgatcacgcgtgcggaaaagaagctctcattctcc
tacgccgagagccgttaccagtggggccgcctgaaaatgtgcgagccgagccggttcctg
ctcgaagtggaacagaagtatttgaacgtgaataaaatggtgcaaagtgccctcgaacgc
gacacgacgcctcctgtgacgacatttgcccgcaacctggtgcagcgcaaaacagaggcc
aaaccggcagtaaccgccgcgacaagccacgttccttcggccgatttcgtgcctaccgac
acgttcgatctggcggaaggcgacaaggtggagcatttgaaattcggtttcggggtggtg
accaaaatggacgtcaatggtaccgaccggaaagcgaccgtcaaattcgatctcgtcggt
gaaaaaacgctgctccttagctttgcaaaacttcgggtgatgaaataa
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