Dyadobacter fermentans: Dfer_3913
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Entry
Dfer_3913 CDS
T00970
Name
(GenBank) 2-dehydro-3-deoxyphosphooctonate aldolase
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
dfe
Dyadobacter fermentans
Pathway
dfe00541
Biosynthesis of various nucleotide sugars
dfe01100
Metabolic pathways
dfe01250
Biosynthesis of nucleotide sugars
Module
dfe_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
dfe00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
Dfer_3913
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
dfe01005
]
Dfer_3913
Enzymes [BR:
dfe01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
Dfer_3913
Lipopolysaccharide biosynthesis proteins [BR:
dfe01005
]
Lipid A
Dfer_3913
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
NeuB
Motif
Other DBs
NCBI-ProteinID:
ACT95117
UniProt:
C6VXT4
LinkDB
All DBs
Position
complement(4757856..4758668)
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AA seq
270 aa
AA seq
DB search
MISIPKLKNTDSTSFFLMAGPCAIEGRDMALRIAEHIVTVTDRLRIPYIFKGSYRKANRT
KIDSFTGIGDEKALKILQEVSQTFGIPTVTDIHESHEAALAAEYVDVLQIPAFLCRQTEL
LAAAARTGKAVNVKKGQFLSGASMKFAAEKINEVNPDAQVILTDRGNSFGYGDLVVDYRN
LPEMAAFGVPVVMDCTHSLQQPNQTSGVTGGKPKLIETIAKAAIAVGADGLFIETHFNPS
EAKSDGANMLPLDQLEGLLERLVRVREAIL
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgatctcgataccgaagctgaaaaataccgattcgacctcctttttcctgatggccggc
ccctgtgcgatcgaaggacgggacatggccctgcggatcgccgaacatatcgttacggtt
accgaccgcctgcgcattccttatatattcaaaggctcctaccgcaaagccaaccgcacc
aaaatcgactcatttacgggtattggcgatgaaaaagcactgaaaatcttgcaggaagta
agtcagactttcggcattcctactgtaaccgacatccacgaatcgcacgaggccgcgttg
gctgcggagtatgtggacgtgctccaaatccctgcattcctctgccgccagaccgaatta
ctggccgccgccgcacgcacgggcaaggcggtgaatgtaaaaaaggggcaatttctttcc
ggtgcatcaatgaaatttgccgctgaaaaaatcaatgaggtaaatccggacgcacaggta
atcctcaccgaccgcggtaacagcttcggctacggcgacctggtggtggattatcgcaac
ctgccggaaatggctgcattcggcgtgccggtggtaatggattgcacgcattcattgcag
cagcccaatcaaacatccggcgtaaccggcggcaaaccgaaactgatcgaaacgattgcc
aaagccgccattgcagtgggcgcggacggtctttttattgaaacccatttcaatccctcc
gaagccaagtccgacggcgccaatatgctgccgctcgatcagctggaaggactactggaa
agactcgtacgtgtgagagaagctattttatga
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