Desulforamulus ferrireducens: B0537_01910
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Entry
B0537_01910 CDS
T04823
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dfg
Desulforamulus ferrireducens
Pathway
dfg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dfg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B0537_01910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfg03021
]
B0537_01910
03400 DNA repair and recombination proteins [BR:
dfg03400
]
B0537_01910
Enzymes [BR:
dfg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B0537_01910
Transcription machinery [BR:
dfg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B0537_01910
DNA repair and recombination proteins [BR:
dfg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B0537_01910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AQS57956
UniProt:
A0A1S6IT62
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All DBs
Position
377563..381114
Genome browser
AA seq
1183 aa
AA seq
DB search
MLELNNFDSIRIGLASPDKIRQWSSGEVKKPETINYRTLKPERDGLFCERIFGPTRDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEKVLYFVSYIVIDPGDTPLLKKQLLTETEYREYKDKFGNNFKAGMGAEAVKVLLE
EIDLAELARELRQELKDVSGQRKIRAIRRLEVVEAFKKSGNRPEWMIMDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMHQCGLPKE
MALELFKPFVMKKLVNDGHAHNIKSAKRMVERVRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKIHPMVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAANNIL
NPKDGKPVASPTQDMVLGCYYLTMQKDGAKGEGSIFKDEQEAILAYDNGAVSLHALVTVR
RKNGERIQTTVGRIIFNEVIPDKLGFINKVCDKKTLSKIVADCYRKLGNAHTAETLDGIK
ALGYKYSTQAGITIGVADITIPEAKKEILNKAEEQVNKIETQFRRGLITEDERYRKVIGI
WNDATDKVTKALMDSLDRFNNVYMMATSGARGNIQQIRQLAGMRGLMADPSGRIIDLPIK
ANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTTEGV
EVTEIRDGTETIEKLAERLEGRVPMEPVVHPETGEVIISQEQVDNHGLITEEQAQAIQEA
GITKVKIRSVITCKTRYGVCKHCYGKNLATGGAIDIGEAVGIIAAQSIGEPGTQLTMRTF
HTGGVAGDDITQGLPRVEELFEARRPKGQAIVCEEDGVVAIREVKGRREIEITKANGEKN
VYAVPYGARLKVKEGQFVEAGDELTEGSVNPHDLLKIKGPSGVQIYLLQEVQRVYRLQGV
EINDKHIEVMIRQMLRKVKVEEAGDTELLPGGLIDVFEFEEENRKVIEQGGEPAVAKPVL
LGITKASLATDSFLSAASFQETTRVLTEAAIKGKMDPLLGLKENVIIGKLVPAGTGMSRY
RNIEVISDKEQEAEDNRDILLPMGDDQLVAAEKSEDFDLVLEK
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
ttgttagaattaaataactttgatagtatccgaatcggtctggcttcgcctgataaaatt
cgccagtggtccagtggtgaagtaaaaaaaccggagaccatcaactatcgaacattaaaa
cctgagcgggacggccttttctgcgagaggatctttggtcccaccagagactgggaatgc
cattgcggcaaatataagcgggttcgctacaaaggtgttgtctgtgaccgctgcggtgtt
gaagtgacacgctcgaaggttcgccgggaaaggctgggtcacattgaactggcagcgccg
gtatctcatatctggtattttaagggtatccccagccggatgggactgctgcttgatatg
tcccccagagcacttgaaaaggtactgtattttgtctcttatatcgttatcgatcccggt
gacaccccgctgctgaaaaagcaattgctgacagaaactgaataccgggaatacaaagac
aaatttggtaacaactttaaggctggcatgggtgcagaggcggttaaagtcctgctggaa
gaaattgatttagcggaactggccagggaattgcgccaggaattaaaagatgtttccggc
cagcgtaaaattcgggccatccgtcgcctggaagtggtggaggcctttaagaaatccggc
aatcgcccggaatggatgattatggacgtagtgcccgtaattcccccggaacttagacca
atggttcagttagacggtggtcgctttgctacctccgatttaaatgacctctaccgcaga
gttatcaaccgaaataatcgtttaaaacgtttgttggatctaggagcacctgacattatt
gtccgtaacgaaaagcggatgctccaggaagctgtggacgccctgattgataacggtcgt
cgcgggcgcccggtaaccggccccggcaaccggcctctgaaatccttatccgatatgtta
aagggtaagcagggtcgtttccgtcaaaacctgctgggtaaaagggtagactattccggt
cgttccgttattgtggttggtcctaatttaaaaatgcaccagtgcggcctacccaaagaa
atggccttggagctctttaagccctttgtcatgaaaaaacttgtcaacgatggccatgcc
cataacatcaagagtgctaaaagaatggtagaaagagtacggccagaggtctgggatgtg
ttagaggaagtaattaaagaacatccggttctcttaaaccgtgccccaactctacaccgg
ttaggtatccaggcctttgaaccggtattggtggaaggccgggccattaagattcatccc
atggtatgtactgcctacaacgcggactttgacggtgaccaaatggctgtgcacgtaccg
ctgtctgccgaagcacaggccgaagccagactgctaatgctggctgccaacaacatcctt
aacccgaaggatggcaagccggtggccagtcccacccaggacatggttttaggttgctat
tacctgaccatgcaaaaggatggagctaagggcgagggcagtatctttaaagatgagcag
gaagctatcctggcctacgataacggagcagtttctctgcatgcactggtcacggttcgc
cgtaagaacggtgagagaatacaaacaaccgttggtagaatcatctttaatgaagtaatt
ccggataagctgggctttatcaataaagtatgcgataagaaaactctcagcaagattgtc
gccgattgttatcgtaagctgggtaatgcccataccgcagaaacactggatggtataaaa
gctttgggttataaatactccacccaggcgggtattaccattggtgtggctgacatcacc
attccggaagcgaaaaaagaaattttgaacaaagccgaagaacaggttaataaaattgaa
acccaattccggcggggtctcattactgaggatgaacgctatcgtaaagtaattggcatt
tggaatgatgccacggataaagtaaccaaagcccttatggacagcttagatagatttaat
aacgtgtacatgatggctacctccggtgcccgtggtaacattcagcagattcgtcagctg
gccggcatgcgtggtttgatggctgacccatcgggtagaattattgacttgcccattaaa
gccaacttccgggaaggcctgaccgtattagaatactttatctccactcacggtgcccgg
aaaggtttggcggatacagccctgcgtaccgccgactcaggttatctaacccgtcgtctg
gtggatgtggctcaagacgtaattgtccgggaagatgattgcggtaccaccgaaggggtg
gaagttactgaaatcagagacggtacggaaaccattgaaaaacttgctgaacgcctggaa
ggccgcgttcctatggaaccagtggttcatccagaaaccggcgaagtgattatctcccag
gagcaagttgacaaccacggtctgattactgaagaacaagcccaggccattcaggaggca
ggcattactaaggttaagatacgttccgttattacctgtaaaactcgctatggcgtttgc
aagcattgttacggcaaaaacttagccaccggcggtgccatcgatattggtgaagcagtg
ggcatcattgccgcccagtccatcggcgaaccaggtacccagctgaccatgcgtaccttc
cacaccggtggtgtagccggagacgatattacccaaggtcttcccagggttgaggaatta
tttgaagcccgtcgacctaaaggtcaggccattgtttgcgaagaagacggcgtagtagct
attagggaagtgaagggacgccgcgaaatagagattactaaggctaacggcgaaaagaat
gtctatgcggtgccctacggtgctcgcctcaaagtcaaagagggtcagtttgtggaagca
ggggacgaactaacagagggttctgtcaacccgcacgatctattaaagatcaaaggtccc
tccggcgtacagatttacctgctgcaggaagtacagcgagtctatcgcttgcagggtgtg
gaaattaatgataaacacatcgaagtaatgattcgtcagatgctgcgcaaggtaaaagtt
gaggaagccggcgataccgaactgctgcccggcggactgatcgacgtctttgaatttgaa
gaagagaaccgcaaggttattgaacagggcggcgaaccggcggtggccaaaccggtactg
ctgggtatcaccaaggcatccttggccacagactccttcctctccgctgcttccttccaa
gagaccaccagggtattaactgaagcagccatcaaaggtaagatggatccgctgctcggc
ttaaaggaaaacgttattattggcaaacttgtacctgccggcaccggtatgtcacgctac
cgtaatatagaagtgatttccgataaagaacaagaggctgaagataatcgtgacatactt
ttacccatgggtgatgaccagttggtagcagcagaaaaaagtgaggattttgacctggtt
ctagaaaaataa
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