Desulforamulus ferrireducens: B0537_12790
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Entry
B0537_12790 CDS
T04823
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
dfg
Desulforamulus ferrireducens
Brite
KEGG Orthology (KO) [BR:
dfg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dfg03016
]
B0537_12790
Enzymes [BR:
dfg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
B0537_12790
Transfer RNA biogenesis [BR:
dfg03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
B0537_12790
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
ATPase_RavA_C
Motif
Other DBs
NCBI-ProteinID:
AQS59879
UniProt:
A0A1S6IYM2
LinkDB
All DBs
Position
complement(2605459..2606043)
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AA seq
194 aa
AA seq
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MDTVRLFIAISLPAAIKASLAELQKNLQVGGDQVKWVERENFHLTLKFLGATPQAKCPGI
IQAMEEVAENYNPFELRITGLGTFPARGRLKVVWAGLGGNKGQLVSLQASLEQKLATFGF
PPEQRQYTPHLTLGRIKAFANLGDLPDRINLLKNQGSAPWQVNAMELMQSTLTPAGPIYQ
VLGRVPFPDTRSNR
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atggatactgttagattgttcatcgctatcagtctgccagcagctattaaagcaagctta
gctgagttacaaaaaaatctccaggtcggcggggaccaggtaaaatgggtagagcgggaa
aactttcatcttactctgaaatttttaggggcaaccccgcaagcaaaatgccctggtatt
attcaggctatggaggaagtggcggaaaattacaatccctttgagctaagaataacaggc
cttggtaccttcccagccagagggcgactaaaggtggtatgggcaggtctgggtggcaac
aaaggtcagttagtgtcacttcaggcatccttggaacaaaaattagctaccttcggcttt
cccccggagcaacgtcaatataccccccatctcaccttaggtagaattaaagcatttgcc
aacctgggggacttgcctgacagaattaatttactcaaaaaccaaggcagcgctccttgg
caggttaacgccatggagctaatgcaaagtacccttacccctgccggaccgatttatcag
gtactggggagggttccttttccggatactcggtctaatcgctaa
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