Desulforamulus ferrireducens: B0537_15920
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Entry
B0537_15920 CDS
T04823
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dfg
Desulforamulus ferrireducens
Pathway
dfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0537_15920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfg03019
]
B0537_15920
03400 DNA repair and recombination proteins [BR:
dfg03400
]
B0537_15920
Enzymes [BR:
dfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B0537_15920
Messenger RNA biogenesis [BR:
dfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B0537_15920
DNA repair and recombination proteins [BR:
dfg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B0537_15920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AQS60428
UniProt:
A0A1S6J088
LinkDB
All DBs
Position
complement(3237208..3238977)
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AA seq
589 aa
AA seq
DB search
MLEKARRVLKEFYGYTSFRSGQEKIIQNILAGRDTLGIMPTGGGKSLCFQIPALLFSGLT
LVVSPLISLMKDQVDALNNLGVKATYINSSLDYREITDRLRAARQGQYRLIYIAPERLES
PRFRETLTSLTVSQLAVDEAHCISQWGHDFRPSYLALPSLLKELTPRPVVTAFTATATPE
VKKDIVQRLMLKKPLIYVSGFDRENLSFAVIRGENKKDFIADYLKQNKGKPGIIYAATRK
EVDALYEALSKKGFPVGKYHAGMTEQERTRNQEMFLYDDLTVMVATNAFGMGIDKSNVRY
VIHYNMPKNMESYYQEAGRAGRDGEAGECILLFSSQDIQIQKYLIEVSELAPERKTNEYQ
KLQAMVDYCHTPGCLRRYILQYFGESNLADSCGNCSNCNDERELVDITVEAQKIFSCVYR
MQEQYGVTLVADVLKGSRSKKIQQYGFHRLSTYGLLKEHTAKQIADMIHILIAEGYLALT
EGQYPVVKLRPKAVPVLKGQEKVFQKIRRTAQEPQADNGLFEKLRELRKELSQRERVPPY
IIFPDSTLQELCKYRPTDKESFLAVKGVGQAKYERFGREFIDVIIKYGS
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgctggaaaaagcgcggcgggtgttaaaggagttttatggctatacctcctttcgcagt
ggacaggaaaaaattattcaaaacatactggcaggacgagataccctgggtatcatgccc
accggcggcgggaaatccctttgctttcaaatcccagccctgttgttttcgggccttacc
ctggtggtttctccgctaatctcactaatgaaagaccaggtggatgccctcaataacctg
ggggtcaaggctacctatatcaacagttccttagattatagggaaattactgacagactt
agggctgccagacagggccaatataggctcatctatattgcgccggaaaggctagagtca
ccaagatttagggaaaccctaacctcgctgactgtctctcaactggccgttgatgaagca
cactgtatttcccaatgggggcatgattttcgccccagctacctggcactgcccagtttg
ctgaaagaactcactccacgtccggtggtgacagcctttactgccacagccacgccggaa
gtaaaaaaagacatcgtgcagcggttgatgctgaaaaaaccgctaatttatgtcagtggc
ttcgaccgagagaacctttcctttgccgttatccggggggagaataagaaggattttata
gcagactatttaaagcaaaataaaggtaagccaggcattatttacgcagctacccgaaaa
gaagtggacgccctttacgaagcccttagtaaaaagggctttccggtgggtaagtatcac
gcagggatgactgaacaggagagaaccagaaaccaggaaatgttcctttatgatgatctc
accgtcatggttgccaccaatgcctttggtatggggattgataagtccaacgttcgctat
gtgatccattacaatatgcccaagaacatggaatcctactatcaagaagcaggacgggcg
ggacgggatggtgaagcgggggaatgtatcctgttattcagttcccaggatatacaaata
caaaaatatctaatagaagtaagtgagctggctccggaaagaaaaactaacgaataccaa
aaattacaagccatggtggattattgccacacccctggctgtctccgacgctatattcta
caatactttggggagagcaatctcgcggactcctgtggcaactgcagcaactgtaatgat
gagcgggagttagtggatatcaccgtggaagcgcaaaagattttttcctgtgtctaccgt
atgcaggaacaatatggtgtcaccctggtggctgatgttctcaaaggctcacgcagcaag
aaaattcagcaatacggctttcataggctgagcacctatggcttgctcaaggagcatacg
gccaaacagatagccgatatgattcatattttaatagccgagggctatctggccctcacc
gaaggccaatacccggtggtaaaacttagacccaaggcagtacccgtactaaagggacaa
gagaaggtctttcaaaaaataagaaggacagcccaggaaccccaggcagacaatggcctg
tttgaaaagttaagggaactgcgcaaggaattatcccagagggaaagagtaccgccctat
atcattttccccgacagcactttgcaggaactatgcaaatatcgtcccacagacaaagag
tctttcctggccgtcaaaggtgtcggccaggcaaagtatgaacggtttggcagggaattt
attgatgtgatcattaaatatggcagttag
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