Desulfovibrio fairfieldensis: AXF13_02795
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Entry
AXF13_02795 CDS
T04293
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dfi
Desulfovibrio fairfieldensis
Pathway
dfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXF13_02795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfi03019
]
AXF13_02795
03009 Ribosome biogenesis [BR:
dfi03009
]
AXF13_02795
Enzymes [BR:
dfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXF13_02795
Messenger RNA biogenesis [BR:
dfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXF13_02795
Ribosome biogenesis [BR:
dfi03009
]
Prokaryotic type
rRNA helicases
AXF13_02795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_30
CMS1
Helicase_RecD
Cgl0159
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AMD89126
UniProt:
A0A0X8JI76
LinkDB
All DBs
Position
647460..649223
Genome browser
AA seq
587 aa
AA seq
DB search
MTASFEELGLSQDLLDAVKDMGFEEPSPIQVLAVPALLAGRDAVGQAQTGTGKTAAFGLP
ILEKVISGKGVQALVLCPTRELAIQVAEELSKLAARKKGVTILPVYGGQLIERQFRALAK
GAQVVVGTPGRIIDHLQRGTLRLDEVDVVVLDEADEMLDMGFREDIEAILERTPDGCQRI
LFSATMPPSIRELSKRFLREPEMLTIAHKMLTIPAIEQTYYEVRPYQKMDALCRVLDSQG
FRKALVFCSTKRGVDEVTTHLQQRGYQSDGLHGDLAQAQRDRVMQRFRTEGLEILVATDV
AARGIDVDDVDAVINYDMPHDVEKYVHRVGRTGRAGRVGSAFTFVTMREQYKLRDIIRCT
KARIKQGRLPTLRDVDNIRTSRLLEEVRQTVEAGTPERWLALVEDFLAERFPEGGVTGRE
MAAALLKLLMQRDFGNQDASREPDVFAEPPRRSAPDGAPSRDARGGDSPNPHGRKNSAPM
TKLRVSVGHTHKVSPRELVGAIAGESGISSRDIGAIGIRQQYSVVEVAEEVAEHVLAVLN
RGVFICGTRVSAVVDDSGTGAAHPRKPPNFGPRRQRPVKYGKKPRGA
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcatcttttgaagaactgggtttgtcccaagaccttttggacgccgttaaggat
atgggctttgaggagccttctcccatccaggtattggcagttccggcattgctggccggg
cgggatgcggtcgggcaggcgcagacgggcaccggcaagacagcggctttcggtctgccc
attctggaaaaagtcatttccggaaagggcgttcaggccctggtgctttgccccacgcgc
gagctggctattcaggtggccgaggaactgagcaagctggccgcgcggaagaaaggagtc
acgattcttcccgtgtacggcggccagctcattgaacggcagttccgggctttggccaaa
ggcgcgcaggtcgtggtgggaacgccgggccggatcatcgaccatttgcagcgcggcacg
ctgcgcctggacgaagtggacgtcgtggttttggacgaggccgatgagatgctggacatg
ggctttcgcgaggatattgaagccatcctggagcgaactccggacggctgccagcggatt
ttgttttcagccaccatgccgccgtccatccgggagttgagcaagcgctttctgcgcgag
ccggaaatgctgaccattgcccataaaatgctcaccattccggccattgagcagacctat
tacgaggtgcggccgtaccagaagatggacgctctctgccgggtcctggattcgcaggga
ttccgcaaggccctggtgttctgctccaccaagcgcggcgttgatgaagtgaccacgcac
ctgcagcagcggggctaccagtccgacggtctgcacggtgatctggcccaggcccagcgg
gaccgggtgatgcagcgcttccgtacggaaggcctcgagattctggtcgccacggatgtg
gcggcgcgcggcattgacgtggatgatgtggatgcggtgatcaattacgatatgccgcat
gacgtggaaaaatatgtgcaccgcgtcgggcgcaccggccgggcgggccgcgtgggcagc
gcctttacttttgtcaccatgcgcgaacagtataagctgcgcgacatcatccgctgcacc
aaggcccgcatcaaacagggccgcctgccgaccctgcgggacgtggacaatatccgcact
tcccggctgctggaggaagtgcgccagactgttgaagccggaacgccggaacgctggctg
gcgctggtggaagattttctggccgagcgttttccggaaggcggggtcaccggccgcgag
atggccgccgctttgctcaagctcctgatgcagcgggatttcggcaatcaggacgcgtcc
cgcgagcccgatgtttttgccgaaccgccccggcgttccgccccggacggcgcgccttcg
cgggacgcccggggcggggacagcccgaatccccacggacggaaaaacagcgcgcccatg
accaagctgcgggtcagtgtggggcatacgcacaaggtttccccacgcgagctggtgggc
gccattgccggagaatccggcatatcaagccgcgacatcggcgccatcggcatccggcag
caatacagcgtggtggaagtggccgaggaagtggccgagcatgtgctggcggtgctcaat
cgcggcgtgtttatctgcgggacgcgggtgagcgccgtcgtggacgacagcggcacgggc
gccgcgcatccgcgcaagcccccgaacttcggcccgcgccgccagcggcccgtaaaatac
ggtaaaaagccgcgcggcgcgtga
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