Desulfovibrio fairfieldensis: AXF13_03705
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Entry
AXF13_03705 CDS
T04293
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dfi
Desulfovibrio fairfieldensis
Pathway
dfi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dfi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AXF13_03705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfi03021
]
AXF13_03705
03400 DNA repair and recombination proteins [BR:
dfi03400
]
AXF13_03705
Enzymes [BR:
dfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AXF13_03705
Transcription machinery [BR:
dfi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AXF13_03705
DNA repair and recombination proteins [BR:
dfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AXF13_03705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AMD89290
UniProt:
A0A0X8JI70
LinkDB
All DBs
Position
complement(853291..857463)
Genome browser
AA seq
1390 aa
AA seq
DB search
MSLDDLFTARGTSANVTNIRNLKAIQISIASPESIREWSYGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDMTMADLEKVLYFDSYIVLDPGQTNLQKRQVISEDQYLQILDHYGSD
EVLTVGMGAEAVRSLLEELDLEKLRVELREESEATKSQTKKKKLTKRLKIVEAFLESQNK
PEWMIMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPEIIIR
NEKRMLQEAVDALFDNGRRGRAIAGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRS
VITVGPYLKLHQCGLPKKMALELFKPFIYSELEKRGHASTIKSAKKMVEREELVVWDILS
EVVREYPILLNRAPTLHRLGIQAFEPLLVEGKAIRLHPLVCSAYNADFDGDQMAVHIPLS
VEAQIECRVLMMSTNNILSPANGGPVIVPSQDIVLGLYYMTVERSFEKGEGMTFCAPWEV
EAAYDAGQVSLHARVKVRMKEGEDLVQTTPGRVLVSDILPPELSFEHVNTVLTKKAIAKL
VGAAYRTCGIKSTVILCDKLKDMGYEFATRAGVTIGVKDLTIPESKKNILAKSQAEVDDI
ERQYRDGIITRTEKYNKVVDVWTKATQDVSTEMIKEISYDVLTDEKTGKQEKNQSFNPIF
MMSNSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGL
ADTALKTANSGYLTRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGDIKTPLAERIIGRV
LLYPVHDPDEPEKILLPENTLITESEAKLINDKGISSVMVRSPLTCQSERGICALCYGRD
LARGHLVNTGETVGIIAAQSIGEPGTQLTMRTFHIGGTASSTIEKNKFEAQNAGRVILNR
VRAVTNRDGAQLVLGKSGQLTIVDPQGREREKYILPNGARLMVHDGQEVTKGVVLAEWDP
FNEPFVSEEDGVIRFTDIIDGKTVQEKVDDVTRQASLTIMEYRTTNFRPSISICDDNGNV
KKRVHGAAAAIYSLPVGSIIMVKDGENIQAGDIIARKPRETSKTKDIVGGLPRVAELFEV
RKPKDMAVVSEIAGTVTYAGESKGKRKLVVTPEIGEAKEYLVPKGKHITAADGDFVEAGD
PLTEGYPELHDILRTRGEKYLARYLVDEIQEVYRFQGVGIDDKHIEVIVRQMLKKVTILD
SGGTSFLVGEQVDKSEFKAENQRTIAEGRVPATAEPLVLGITQASLTTSSFISAASFQET
TKVLTEASLKGKMDYLRGLKENVIVGRLIPAGTGYREYVNGDIEVPDQKERPDKFLEELE
ENPVLVDLNQ
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggacgatcttttcactgctcgcggcacgtcggccaatgtgaccaacatccgc
aatctgaaagccatccagatttccatcgcttcgcccgaatccatccgcgaatggtcctac
ggcgaagtgaaaaaaccggaaaccatcaactaccgcaccttcaagccggagcgggacggt
ctgttctgcgccaaaatcttcggcccggtgaaggactacgagtgcaactgcggcaaatac
aagcgcatgaagcaccgcggcatcgtctgcgaaaaatgcggggttgaagtcatcgcctcc
aaggtgcggcgcgagcgcatgggccacattgagctggccgcgcccgtggcccacatctgg
ttcctgaagaccttgccctccaagatcggcaccctgctggacatgaccatggccgatctg
gaaaaggtgctctacttcgactcctatatcgtgctggatcccggccagaccaatctgcag
aagcggcaggtcatttccgaggaccagtaccttcagattctggaccactacggcagcgac
gaggtgctcaccgtgggcatgggcgcggaagccgtgcgcagcctgctggaagagctggac
ctggaaaagctgcgtgttgagctgcgcgaggaaagcgaggccaccaagagccagaccaag
aagaaaaagctgaccaagcgcctgaagatcgtggaggcttttctggaatcccagaacaag
cccgaatggatgatcatggaggtcattccggtcattccgccggaactgcgtcccctggtg
cccctggacggcggccgtttcgccacctcggacctcaacgatctctaccgccgggtcatc
aaccgcaacaaccgcctcaaacggctcatggagctgggcgcgccggaaatcatcatccgc
aacgaaaagcgtatgctccaggaagccgtggacgcgctcttcgacaacggccgccggggc
cgggccatcgccggcaccaacggccgcccgctcaagtctctgtcggacatgatcaagggc
aagcagggccgcttccgccagaacctcctgggcaagcgcgtggactactcgggccgttcg
gtcatcaccgtgggcccctacctcaagctgcaccagtgcggtctgcccaagaagatggcc
ctggagttgttcaagcccttcatttattcggaactggaaaaacgcggccatgcctccacc
atcaagagcgccaaaaagatggtggagcgcgaggaactggtggtctgggacatcctttcg
gaagtggtacgcgagtaccccattctgctcaaccgcgccccgaccctgcaccgcctgggc
atccaggcatttgagcccctgctggtggaaggcaaggccatccgcctgcatcccctggtc
tgctccgcctacaacgcggacttcgacggcgaccagatggccgtgcatattccgctgtcc
gtggaggcccagatcgaatgccgcgtgctgatgatgagcaccaacaacattctgtccccg
gccaacggcggtccggtcattgtgccctcgcaggacatcgtgctgggcctctactacatg
accgtggagcgcagctttgaaaagggcgagggcatgaccttctgcgcgccttgggaagtg
gaagccgcctacgacgcgggccaggtctccctgcacgcccgggtcaaggtgcgcatgaag
gaaggcgaggatcttgtgcagaccacgccgggccgtgtgctggtcagcgacattctgccg
ccggaactctctttcgagcacgtcaacacggtgctgaccaagaaggccatcgccaagctg
gtgggcgcggcctaccgcacctgcggcatcaagtccacagtcatcctctgcgacaagctc
aaggacatggggtatgagttcgccacccgcgccggtgtgaccatcggcgtgaaggacctg
accattcccgaaagcaagaagaacatcctggccaaatcccaggccgaggtggacgatatc
gaacgccagtaccgcgacggcatcatcacccgtacggaaaagtacaacaaggtggtggac
gtctggaccaaggccacgcaggacgtttccacggaaatgatcaaggagatctcctacgac
gtgctcacggacgagaagacgggcaagcaggaaaaaaaccagagcttcaatcccatcttc
atgatgtccaactccggcgcgcgcggcaaccaggaccagatgcgccagctcgcgggcatg
cgcggcctgatggccaaaccgtcgggcgaaatcatcgaaacgcccatcacctcgtccttc
cgcgaagggctctcggtgttgcagtacttcacctccacccacggcgcgcgcaagggcctg
gcggacacggccctgaagacggccaactccggttacctgacccgccgcctggtggacgtg
gtccaggacgtgatcgtttccgagcacgactgcggtacggtggacggcattgagctgacc
cacatcaaggaaggcggcgacatcaagaccccgctggccgaacgcatcataggccgtgtg
ctgctctatcccgtgcatgacccggacgagccggaaaaaatcctgctgcccgaaaacacc
ctgatcacggaaagtgaagccaagctgatcaacgacaagggcatctcctcggtcatggtg
cgctcgcccctgacctgccagtcggaacgcggcatctgcgccctgtgctacgggcgcgac
ctggcccgcggccatctggtcaataccggcgaaaccgtgggcatcatcgctgcccagtcc
atcggcgagccgggcacccagttgaccatgcgcaccttccacatcggcggcacggcttcg
agcaccattgaaaagaacaagttcgaagcccagaacgcgggccgggtgatcctgaatcgc
gtacgggccgtgaccaaccgtgacggcgcgcaactggtgctgggcaagagcggccagctg
accatcgttgacccgcagggccgcgaacgggagaaatacattcttcccaacggcgcgcgc
ctgatggtccatgacggccaggaagtgaccaagggcgtcgtgctggccgaatgggacccc
ttcaacgaaccctttgtgtccgaagaagacggcgtgatccgcttcacggacatcatcgac
ggcaagaccgtgcaggaaaaggtggacgacgtcacccgtcaggcctcactgaccatcatg
gagtaccgcaccaccaacttccggccctccatctccatctgcgacgacaacggcaatgtg
aagaagcgcgtgcacggcgcggcggcggccatctacagcctgcccgtgggttccatcatc
atggtcaaggacggcgagaacatccaggccggcgacatcatcgcccgcaagccccgcgaa
acctccaagaccaaggatatcgtgggcggcctcccgcgcgtggccgagctctttgaagtg
cgcaagcccaaggacatggccgtggtttccgaaatcgcgggcaccgtcacctacgcgggc
gagtccaagggcaagcgcaagctggtggtcacgccggaaatcggcgaggccaaggaatac
cttgtgcccaagggcaagcacatcaccgccgcggacggcgacttcgtggaagcgggcgat
cccctcaccgaaggctatccggaactgcacgatatcctgcgcacccgaggcgagaaatac
ctggcccgctatctggtggacgaaatccaggaagtctaccgcttccagggcgtgggcatc
gacgacaaacacatcgaagtgattgtgcgccagatgctcaagaaggtgaccatcctcgac
tccggcggcaccagcttcctggtgggcgagcaggtggacaagagcgagttcaaggccgaa
aaccagaggaccatagccgagggccgcgttccggccacggcggaaccgctggtgctgggc
atcacccaggcctcgctgaccacctcatccttcatctcggcggcttccttccaggaaacc
accaaggtgctcaccgaagcctcgctcaagggcaagatggactatctgcgcggcctcaag
gaaaacgtcatcgtgggccgcctgatcccggcgggtacgggctaccgcgaatacgtgaac
ggcgacatcgaggtgccggaccagaaggaacgccccgacaagttcctggaagaactggaa
gaaaaccccgtgctggtggatctgaatcagtaa
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