Desulfovibrio fairfieldensis: AXF13_03975
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Entry
AXF13_03975 CDS
T04293
Name
(GenBank) RNA modification enzyme, MiaB-family protein
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
dfi
Desulfovibrio fairfieldensis
Brite
KEGG Orthology (KO) [BR:
dfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dfi03016
]
AXF13_03975
Enzymes [BR:
dfi01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
AXF13_03975
Transfer RNA biogenesis [BR:
dfi03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
AXF13_03975
Prokaryotic type
Methylthiotransferases
AXF13_03975
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
Motif
Other DBs
NCBI-ProteinID:
AMD89336
UniProt:
A0A0X8JIL4
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All DBs
Position
complement(906290..907705)
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AA seq
471 aa
AA seq
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MPAWKFFIATFGCKVNQYESQSLREAWQKLGGEECDVPGEADVLCVNSCAITAKGERDAR
NAVFRLRREAPAARLILTGCAARLFTEFRPRPGAAWAEPDLLVPQEDKSRLLRGPWPEGN
APGLPAAESIRAEAPANFPPFRISSFRRARPVLKVQDGCAHRCTYCIVPLTRGRPRSRAP
QEVLDEARRLLRAGHAELMLSGVNLRQYGRDVPDYGDFWDLLRFLDGHLAPEFADRARLR
ISSLEPSQLDRRGLETLTACRMLCPHLHISLQHASPAVLKRMGRGHYTAGMLEEGVAALA
AHWPRMGLGADILVGFPGETDEDLRLLLELVQRLPLSYAHVFPYSRRPGTAAEAFAGHLP
QALKLRRAAEVRAAVARRHQDFLRDQLALPRMLVAADILKHATAGADVGMPETDGLSGLC
KGVNEFYAPCFFRAPANGTVSPEVLSGLLAARPVRATEKGLLVELMSDFSH
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcctggaaatttttcattgcgaccttcggctgcaaggtcaatcagtacgaaagc
caatccctgcgcgaagcctggcaaaagctgggcggcgaggagtgcgacgtgccgggcgag
gccgatgtgctctgcgtcaacagttgcgccatcaccgccaaaggcgaacgcgacgcgcgc
aatgcggtcttccgcctgcggcgcgaagccccggcggcacgcctgatccttaccggctgc
gcggcccgcctgttcacggagttccgcccccggcccggcgcggcctgggccgaaccggac
ctgctggtgccgcaagaggacaagagccgcctgctgcgcggcccctggccggaggggaac
gcgcccggccttccggcggcggagagcatccgggctgaagcgccggcaaatttccctccc
ttccggatcagcagtttccggcgcgcccggcccgtcctcaaagtgcaggacggttgcgcg
caccgctgcacctactgcatcgtgccgctcacacgcggcaggccgcgcagccgcgccccg
caagaggttctggatgaagcccgccgtctgctgcgcgccgggcacgccgaactcatgctt
tccggcgtcaatctgcgccagtacggccgcgacgtgccggattacggggatttctgggat
ctgctgcgctttctggacggacatctggccccggaattcgcggaccgggcccgcttgcgg
atcagctccctggaaccttcgcagttggaccggcgcggcctggaaaccctgacggcctgc
cgcatgctctgcccgcatctgcacatctcgctccagcacgccagtccggcggtgctcaaa
cgcatggggcgcggccactacacggcgggcatgctggaagaaggcgtggccgccctggcg
gcccactggccgcgcatgggtctgggcgcggacattctggtgggttttcccggcgaaaca
gacgaggatttgagactgttgctggaactggtccagcgcctgcccttgagctacgctcac
gtcttcccctactcacggaggcctggcacggcggcggaggcctttgccgggcatttgccc
caggccctcaaactccgacgcgcggccgaggtgcgcgcggccgtggcgcgtcgccaccag
gactttctgcgcgaccagctcgccctgccgcgcatgttggtggccgccgacattctgaaa
cacgccacggcgggagcggatgtcggaatgccggaaaccgacggcctcagcggcctgtgc
aagggcgtcaacgagttttacgccccctgctttttccgggctccggcaaacggaacggtc
agtcccgaggtcctctccggcctgctggccgcgcggcccgtgcgggccacggaaaaaggc
ctgctggtggaactgatgtctgatttttcacattag
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