Desulfovibrio fairfieldensis: AXF13_04335
Help
Entry
AXF13_04335 CDS
T04293
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dfi
Desulfovibrio fairfieldensis
Pathway
dfi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AXF13_04335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfi03400
]
AXF13_04335
Enzymes [BR:
dfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXF13_04335
DNA repair and recombination proteins [BR:
dfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AXF13_04335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMD89401
UniProt:
A0A109W3X4
LinkDB
All DBs
Position
1016927..1020367
Genome browser
AA seq
1146 aa
AA seq
DB search
MQNFSALLASRDGQLYLERSGMATRCRLACEALAQGRGSVLLARNREEFHAARALLTLFL
PQLSLGDIPIGQAVWESPCLSLPAMSQWRDRDSWAARMSALYALAQGGPRCVVAGVESVL
LRYMPLHFFDSRSLGLSRGGEYSPELILDQAVEWGYERVSLVTRPGDMARRGDILDIFPP
GYAKPVRLEFFGDAIEEMRLFDAESQRSLRPLDELTLLPVSPLALDKNGLAAARKRCDQL
FSEGRINENECYSFKKALDGGGAGILPGVLCDSPSLLEEWLPADSLWLLPGEADSAEALR
DGRLALKEALEAEDAPLQQPAALALRKHSQPAPWRNFQCAFAEPLVMGVVERGADFQERA
LHGFSDLFPLPAAQDRPWQHLAAGLKEWQSQRRQVILSFSSERGRNKFLKLAEQDGIIPA
LRYTPEGRGLFALVSPFRSGVELVWDNSLVLGEDIIYPRAEKTPRAASRAFKGLDTFDDL
KKGDLLVHRDYGIGRFAGLHHLDLNSAANDFLLIEYSGRDKLYVPADRLGLIQRFKGTEG
VEPALDRLGGPAWAAGKEKARKAIEKIAADLVEMYAYRKVAKGFRYDPPGELYHEFEATF
GFEETPDQAKAIQDVLDDMDRGEPMDRLICGDVGFGKTEVALRAAFRAAAEGRQVALLCP
TTVLAEQHYQTFRARLAGFPVNVGLLSRFVTKPRQKEVLKAAAAGQIDILIGTHRILSSD
VKLPNLALLVLDEEQRFGVRHKEKLKALKKNVDVLTLTATPIPRTLQLSMSGIRELSIIE
TAPQDRKPVATAVLRRDDAVLSKVIEREIEREGQVFWVYNRVQGLERVVEYVRKLAPQAR
VGMAHGQMSETELETTMHKFWHGELDVLVCTSIVESGLDFPRANTLVVDQAQMFGLGQLY
QLRGRVGRSDRQAYAFFVVPDAERLTAVAEERLRIIMDMDYLGAGFQVAMEDLRLRGAGN
ILGEVQSGHMSRVGLELYLEMLEEAVGRLKGTPSALAVETELTLGLPAHIPASYIDDGRE
RLRCYKALTSAVGGSAREEAALSMRDRFGPFPEELTNFLAVLDFKQFLTELQVQRADVHR
DHLRMFWPEGQTAVQPERIVELAAKMPGARLHPPAGLTLPLAADLPFSEGLQKVRVALEE
IRTAAS
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatttcagcgcactgcttgcaagccgggacggacaactctatctggagcgcagc
ggcatggccacgcgttgccgtctggcctgcgaggctctggcccaggggcgcggctcggtg
ctgctcgcccgtaaccgtgaggaattccacgcggcccgcgccctgctgacgctttttctg
cctcagctttccctgggcgatatccccatcggtcaggccgtatgggaaagcccctgcctg
agcctgcccgccatgagccagtggcgggacagggacagttgggccgcccgcatgtccgcg
ctgtacgctctggcccagggcggcccgcgctgcgtggtagccggggtggaaagcgtgctg
ctgcgctatatgcccctgcatttttttgattcgcgcagcctgggcctctcgcgcggcggc
gaatactcgccggagctcatcctggatcaggccgtggaatggggctatgagcgcgtttcc
ctggtgacgcgccccggcgacatggcccggcgcggcgatattctggacatcttccctccc
ggttacgccaagcccgtccggctggaatttttcggcgacgccattgaggaaatgcgcctc
tttgacgccgaaagccagcgttccctgcggcctctcgacgaattgaccctcttgcctgtg
agtccgctggctctggataagaacggcctggcggcggcccgcaagcgctgcgatcagctg
ttcagcgagggccggatcaacgaaaacgagtgttattccttcaagaaagccctggacggg
ggcggcgcgggcatcctgcccggcgtgttgtgcgattcgcccagcctgctggaagaatgg
ctgcccgccgacagtctttggctgctccccggcgaagcggacagcgctgaagctctgcgc
gacgggcggctggcgctcaaggaggctttggaggctgaggacgcgcccttgcagcaaccg
gcggccctggccctgcgcaagcattcgcagcccgcgccctggcggaatttccagtgcgcc
ttcgccgaacccctggtcatgggcgtggtagagcggggggcggactttcaggagcgcgct
ctgcacggcttcagcgatcttttcccgctgcccgccgctcaggaccgtccctggcagcat
ctggccgccgggctcaaggaatggcagagccaacgccgccaggttattctgagcttttcc
tccgagcgggggcgcaacaaatttttgaaactggccgagcaggacggcatcattccggcg
ttgcgctacacgccggaagggcgcggcctgttcgccctggtttcacccttccgttccggc
gtggaactggtctgggacaacagtctggttctgggcgaggacatcatctatccccgcgcg
gaaaaaacaccgcgcgccgcgtcccgggccttcaagggcctggacactttcgacgacctc
aagaaaggcgacctgctggtccatcgcgattacggcatcggccgtttcgcgggtctgcac
cacttggacctcaacagcgcggccaacgattttctgctcattgaatattccgggcgggat
aagctctatgtgcctgccgaccgtctgggcctgattcagcgcttcaaggggaccgagggc
gtggaaccggccctggaccgtctgggcggcccggcctgggccgcgggcaaggaaaaggcc
cgcaaggccattgaaaaaatcgcggccgatctggtggaaatgtacgcctaccgcaaggtt
gccaagggcttccgctacgatccgccgggcgagctgtaccacgagttcgaggccaccttc
ggttttgaggaaacgccggaccaggccaaggccatccaggacgtgctggacgacatggac
agaggcgaacccatggaccgcctgatctgcggcgacgtgggcttcggcaagaccgaagtg
gccctgcgcgcggccttccgcgcagccgccgaggggcggcaggtggctttgctctgtccc
accacggtgctggcggaacagcattaccagaccttccgggcgcgtctggccggtttccct
gtcaatgtggggctgttgagtcgttttgtgaccaagccccggcagaaggaagtgctcaag
gccgcggccgccgggcagatcgacattctcatcggcacccaccgtattctttccagcgac
gtgaaactgcccaatctggccctgctggtgctggacgaggagcagcgcttcggcgtgcgc
cacaaggaaaagctcaaagccctgaaaaaaaatgtggacgtgctgacccttacggccacg
cccattccgcgcaccttgcagctttccatgtccggcatccgcgagctgtccatcatcgaa
accgcgccgcaggaccgcaagccggtagccacggcggtgctgcgccgcgacgacgcggtt
ctgagcaaggtcattgagcgcgaaatcgagcgcgaagggcaggttttctgggtttacaac
cgggttcagggcctggagcgcgtggtggaatacgtgcgcaagctcgctcctcaggcgagg
gtgggcatggctcacggccagatgtccgaaaccgaactggaaaccaccatgcacaaattc
tggcatggcgagctggacgtgctggtctgtacctccattgtggaatccggcctggatttt
ccgcgcgccaacaccctggtggtggatcaggcccagatgttcggcctgggccaactctat
cagttgcggggccgcgtgggccgcagcgaccggcaggcctatgccttctttgtggtgccc
gatgccgagcgcctgacggccgtggccgaggaacgcctgcgcatcatcatggacatggac
tatctgggcgcgggtttccaggtggccatggaggacctgcgcctgcgcggggcgggcaac
atcctgggcgaggtgcagtccgggcatatgagccgggtgggactggagctctatctggaa
atgctggaggaagccgtgggccgcctcaaaggcacgccctcggccctggccgtggaaacc
gaactgactctgggcttgcctgcccatattcccgcgtcgtacattgatgacggccgagag
cgtctgcgttgctacaaggccctgacctcggccgtgggcggctctgccagggaagaggcc
gcgctttccatgcgcgaccgtttcggtcccttccccgaggaattgaccaactttctggcc
gtgctggacttcaagcagttccttacggagctgcaggtgcagcgggccgacgtgcaccgc
gaccatctgcgtatgttctggcctgaaggccagaccgccgtgcaaccggagcgcattgtg
gagctggcggccaaaatgccgggtgcgcgcctgcatcccccggcgggcctgaccttgccg
ttggccgctgacttgcctttcagcgaaggtctgcaaaaagtgcgcgtggccctggaggaa
atccgcacggcggcttcctga
DBGET
integrated database retrieval system
