Desulfovibrio fairfieldensis: AXF13_09810
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Entry
AXF13_09810 CDS
T04293
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dfi
Desulfovibrio fairfieldensis
Pathway
dfi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AXF13_09810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfi03400
]
AXF13_09810
Enzymes [BR:
dfi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AXF13_09810
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AXF13_09810
DNA repair and recombination proteins [BR:
dfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AXF13_09810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AMD90387
UniProt:
A0A0X8JKQ8
LinkDB
All DBs
Position
complement(2317531..2318388)
Genome browser
AA seq
285 aa
AA seq
DB search
MPELPEVETVARTLRPQVQECLIEGAEVLRSGSLHPLSLPLATLAGRRIADVGRRGKLLL
VHLAPPESGRTPEETAPDLLAVHLRMTGRLMVYAPGTPPGSHTRCVFDLRTPDGDRRRLF
FDDTRAFGLVLAATPEILQAWDFWRELGPEPLEIGEREFAALLRSRGAALKAVLLDQKVI
AGIGNIYADESLFQAGLDPRRKASSLSPAQSRCLLAALKDVLRRSIAQCGSSIRDYRDAN
GDVGAFQNSFAVYGRGGAACVRCGRPLQKIRVAGRATVCCPHCQK
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactgcccgaagtggaaacagtagcccgcaccctgcgcccccaggtacaggag
tgcctgattgagggggcggaagttctgcggtccggcagcctgcatcccttgagcctgccc
ttggccactttggcgggccgtcgtatcgcggacgtgggccgcaggggcaaactgctgctg
gtgcatctggccccgccggagagcgggcgcactccggaagagaccgccccggatctgctg
gccgtgcatttgcgtatgacaggccgtctgatggtgtacgcgccgggcacgccgcccggt
tcccatacccgttgtgtctttgatctgcgcactccggacggcgaccggcgccgcctcttt
ttcgacgacacgcgggctttcggcctggtgctggccgccacgccggagattttgcaggcc
tgggatttctggcgggagctgggacccgagccgctggagatcggcgagcgggagttcgcg
gccctgctgcgaagccggggcgcggcgctcaaggctgtgttgctggaccagaaggtcatt
gcgggcatcggcaacatctacgccgacgaatccctctttcaggcgggcctggacccgcgc
cgcaaggcttccagcttgagcccggctcagagccgttgcctgctggcggccctcaaggac
gtgctgcgccgctccatcgcccagtgcggcagctccatccgtgattaccgcgacgccaac
ggcgacgtgggcgcatttcagaacagtttcgcggtctatggccggggcggcgcggcctgc
gtccgttgcggccgcccgctgcaaaagatccgcgtggcgggccgcgccaccgtctgttgt
ccgcactgccagaagtaa
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