KEGG   Desulfovibrio fairfieldensis: AXF13_12105
Entry
AXF13_12105       CDS       T04293                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K02405  RNA polymerase sigma factor FliA
Organism
dfi  Desulfovibrio fairfieldensis
Pathway
dfi02020  Two-component system
dfi02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:dfi00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AXF13_12105
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    AXF13_12105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dfi03021]
    AXF13_12105
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:dfi02035]
    AXF13_12105
Transcription machinery [BR:dfi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AXF13_12105
Bacterial motility proteins [BR:dfi02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    AXF13_12105
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 PhyR_sigma-like UPF0122 GerE HTH_28
Other DBs
NCBI-ProteinID: AMD90805
UniProt: A0A0X8JL55
LinkDB
Position
2864184..2864963
AA seq 259 aa
MKTGTAQAQQVSPWEALETGATAWEDFSSAEQEEVVRHYAPKIRFLALRLKSKLPRSVEL
GEMISSGTLGLMEALGKFRPQLGIRFETYAENRIRGAMLDELRRLDWFPRSLRQRVRVLD
EAMRKVEHEQGRQATEEELQDITGLELRDVRQGLEALQNQLWLSLDAIQDTLAGDGPESG
GEPYSNTALRELVERVAPLIERLTPREKLVLSLYYTDELNMRETAEIMGITEGRVSQLHS
QALGRLRKEFASLYGTAEM
NT seq 780 nt   +upstreamnt  +downstreamnt
atgaaaaccggcacagcgcaagcacaacaggtaagtccctgggaagcgcttgaaaccggc
gccacagcctgggaggatttctcctcggcggaacaggaagaggtggtgcggcactacgcg
cccaagatccgctttctggctctgcggctcaaatccaagctgccccgcagcgtggaattg
ggcgagatgatcagctccggcactctgggcctcatggaagctctgggcaaatttcgtccg
cagttgggcatccgctttgagacctacgcggaaaaccgcatccgcggggccatgctggac
gagttgcgccgcctggactggttcccccgctccctgcgccagcgcgtgcgcgtgctggac
gaggccatgcgcaaagtggagcacgagcagggccgccaggccactgaggaggaactgcaa
gatatcaccggcctggagttgcgcgatgtgcgccagggcctggaagccttgcagaaccag
ctctggctctccctggacgccatacaggacaccctggccggcgacggtccggaaagcggc
ggcgaaccctacagcaatacggccctgcgggaacttgtggaacgcgtggccccgctgatc
gaacgcttgacgcctagagaaaagttggtactctcattatattatacagacgaattaaac
atgcgtgaaacggctgaaatcatgggtattaccgaaggccgcgtctcgcagttgcattcg
caggctctgggccgcctgcgcaaagagtttgccagtctgtacggcaccgcggaaatgtag

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