Desulfovibrio fairfieldensis: AXF13_12215
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Entry
AXF13_12215 CDS
T04293
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dfi
Desulfovibrio fairfieldensis
Brite
KEGG Orthology (KO) [BR:
dfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dfi03032
]
AXF13_12215
03400 DNA repair and recombination proteins [BR:
dfi03400
]
AXF13_12215
Enzymes [BR:
dfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AXF13_12215
DNA replication proteins [BR:
dfi03032
]
Prokaryotic type
DNA Topoisomerases
AXF13_12215
DNA repair and recombination proteins [BR:
dfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AXF13_12215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF745
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AMD90825
UniProt:
A0A0X8JL70
LinkDB
All DBs
Position
complement(2891284..2893524)
Genome browser
AA seq
746 aa
AA seq
DB search
MGKQLIIVESPAKVKTIKKFLGPQYAVQASVGHVRDLPSSSLGVDEANDFAPHYEVIENK
KNVVSELRAAAAKADTVYLAPDPDREGEAIAWHVAELIRDKAKDIKRIQFNEITAKAVKD
ALEHPRDLNVNLFDAQQARRVLDRLVGYKISPLLWKTIKRGISAGRVQSVALRLIVEREA
EREAFKPEEYWLFKALLSADVPPPFKAELVKVSGKKAVVSNAEQANTLEAALKGKPFVVE
SVEEKERERAPQPPFITSTLQQAANQRLSYTAKRTMNIAQRLYEGVELGDKGLTALITYM
RTDSTRIADEARQAARDFIVQTFGQDHLPKKARIYKAKGGAQDAHEAIRPVDVTVTPDMV
KPHLPPEQYNLYRLIWSRFVASQMAGARFHDTAALIACAHTLWRAKGERLLFPGFLAVLP
RGKEEADAELPPLKAGQALTLDKLEKEQKFTQPPARYSEASLVRELEELGIGRPSTYAAI
ISTLQDRDYVHLAERHFVPTDLGRVVCRQLTEHFAKLMDVGFTAQMEEGLDKVAEGGRNW
VDLMRAFAADFNPTLDAAAKNMQSLKGGMPTDLPCPDCGKPLLIKFGKAGAFLACSAYPE
CRYTSNFARTEDGKVEAVAQEKPQYEKVGQCPRCGKDLVIKKSRTGSRFIACTGYPACDY
AAPFSTGVPCPRCGKGSLVEKSSKRGKIFYSCDQYPQCDFALWDKPVPGPCPRCDSPYLV
EKKSRDGVKIICPVKGCGYVKEDGDA
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaacagctgatcatagtggaatctccggccaaggtgaaaaccatcaaaaaattc
ctggggccgcagtatgcggtgcaggccagtgtgggccatgtgcgcgatctgccttccagt
tccctgggcgtggacgaggccaacgatttcgcgccccattacgaggtgatcgagaacaag
aagaacgtggtcagcgaactgcgcgccgccgcggccaaggcagacacggtctacctggcc
ccggacccggaccgcgagggcgaggccattgcctggcacgtggccgagctgatccgcgac
aaggccaaggacatcaagcgcatccagttcaacgagatcacggccaaagccgtcaaggac
gccctggagcacccgcgcgacctcaatgtcaatctttttgacgcccagcaggcccggcgc
gtgctggaccgcctggtgggctacaagatttcgcccctgctctggaaaaccatcaagcgc
ggcatttccgccgggcgcgtgcagtccgtggccctgcgtctgatcgtggagcgcgaggcc
gagcgcgaagccttcaagcccgaggaatactggctgttcaaggccctgctgtccgccgac
gtgccgccgccgttcaaggcggaactggtcaaggtcagcggcaagaaggccgtcgtcagc
aacgcggaacaggcgaacacgctggaggccgcgctcaagggcaagccctttgtggtggaa
agcgtggaggaaaaggagcgcgagcgggcgccccagccgcccttcatcacctccaccctg
cagcaggcggccaaccagcgcctttcctacacggccaagcgcaccatgaatatcgcccag
cgcctctatgaaggcgtggaactgggcgacaagggcctcacggcgctgatcacctacatg
cgtaccgactccacgcgtatcgcggacgaggcgcgccaggcggcccgagatttcatcgtt
cagaccttcgggcaggaccatctgcccaaaaaggcccgcatctacaaggccaagggcgga
gcccaggacgcccatgaagccatccgcccggtggacgtgaccgtcaccccggacatggtc
aagccccacctgccgccggaacagtacaatctttaccgcctgatctggtcgcgtttcgtg
gcctcgcagatggccggggcccgcttccatgacaccgcggccctgatcgcctgcgcccac
acgctctggcgggccaagggcgaacgcctgctcttccccggttttctggccgtgctgccg
cgcggcaaggaagaggccgacgccgagctgccgccgctcaaggcagggcaggccctgacc
ctggacaagctggaaaaggaacagaaattcacccagcctccggcccgctacagcgaagcc
agcctggtgcgcgaactggaagagctgggcatcggccgcccttccacctacgcggccatt
atttccactctgcaggaccgcgactacgtgcatctggccgagcgccatttcgtgcccacg
gacctgggccgggtggtctgccgccagctcaccgagcacttcgccaagctcatggacgtg
gggttcacggcccagatggaggaagggctggacaaggtggccgagggcggccggaactgg
gtggatctgatgcgcgccttcgcggcggacttcaatcccaccctggacgcggcggccaag
aatatgcagagcctcaagggcggcatgcccacggacctgccctgcccggactgcggcaaa
cccctgctgatcaaattcggcaaggcgggcgcgttcctggcctgttccgcgtatccggaa
tgccgctacaccagcaatttcgcgcgtaccgaggacggcaaggtggaagccgtggcccag
gaaaaaccgcagtatgagaaggtgggccagtgcccgcgctgcggcaaggatctggtgatc
aagaagtcgcgcaccggcagccgctttatcgcctgcacgggctatccggcctgcgattat
gccgcgcccttttccacgggcgtgccctgcccgcgctgcggcaagggcagcctggtggaa
aagagcagcaagcgcggcaagatcttctactcctgcgaccagtatccccagtgcgatttc
gctctctgggacaagcccgtgcccggcccgtgcccgcgttgcgactcaccctacctggtg
gagaaaaagagccgggacggggtcaagatcatttgcccggtcaagggctgcggctatgtg
aaggaggacggcgatgcgtaa
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