Desulfovibrio fairfieldensis: AXF13_14440
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Entry
AXF13_14440 CDS
T04293
Name
(GenBank) DNA-binding protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
dfi
Desulfovibrio fairfieldensis
Brite
KEGG Orthology (KO) [BR:
dfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfi03019
]
AXF13_14440
Messenger RNA biogenesis [BR:
dfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AXF13_14440
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GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Cas3_HD
HDOD
Motif
Other DBs
NCBI-ProteinID:
AMD91230
UniProt:
A0A0X8JM11
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Position
3428195..3429256
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AA seq
353 aa
AA seq
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MEKGSYVKDIGPASEARGLFVVSQAAQGQSRNGPYWRLTLADASGSLEAKIWHPLSAEFS
DIPVGSVVWAEGRAGLYRDQVQLTVEQLRPLSEEEGAAVDQAALLPASPFSLDEMLDELL
ALCKEEFSHAPWRKLVLGVFNNQELRASFRVCPAAKGVHHAYVGGLLEHTLSVFRLCRRI
ADQYPELDRQALLAGALFHDFGKIREFSGGLANDYTDEGRLLGHLMLGVEMLAPYLAKSG
LDEGLQRHLKHLILSHHGELQFGAVRQPHTAEALALHYADNLDAKMAQCRGLFDQLGGEG
QDWTPWQATLGRPLYRAPRTPEASKPETAASASSAAKGRKKAVREECLSLLKV
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaggttcttacgtcaaagacatcggtccggcctccgaggcgcgcggcctgttc
gtggtcagtcaggcggcccaggggcagtcgcgcaacgggccctactggcggctgaccctg
gccgacgccagcggcagcctggaggccaagatctggcatccgctcagcgcggagttcagc
gacattcccgtgggttccgtggtctgggccgaaggccgcgccggtctctaccgggaccag
gtccagctcacggtggaacagttgcgcccgctctccgaagaggagggcgcggctgtggac
caggccgcgttgctgcccgccagcccattttccctggacgaaatgctggacgagctgctg
gccctctgcaaagaggaattcagccacgcgccctggcgcaagctggtgcttggcgtgttc
aacaatcaggaattgcgcgcgtccttccgggtttgcccggcggccaagggcgtgcaccac
gcctatgtgggcggcctgctggaacataccttgagcgtgttcaggctctgtcggcgcatt
gccgaccagtatcccgaactggaccgccaggccctgctggccggggccctgttccacgat
ttcggcaagatccgcgaattttccggcggcctggccaacgactacacggatgaaggccgc
ctgctgggccatctcatgctgggcgtggaaatgctggccccgtacctggctaaatccggt
ctggacgaggggctgcaacgccatctcaagcatctcattctgagtcatcacggcgagttg
cagttcggcgcggtgcgccagccgcacaccgctgaggctctggccctgcactatgccgac
aacctggacgccaaaatggcccagtgccggggcctgtttgaccagttgggcggggaaggc
caggactggacgccctggcaggccactctggggcggcccctgtaccgggccccgcgcacc
ccggaagcctcgaaaccggagaccgcggcttccgcctcgtccgcggcaaaaggccgtaaa
aaagcggtgagggaagaatgtttatctcttttgaaggtatag
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