KEGG   Desulfovibrio fairfieldensis: AXF13_14440
Entry
AXF13_14440       CDS       T04293                                 
Name
(GenBank) DNA-binding protein
  KO
K03698  3'-5' exoribonuclease [EC:3.1.-.-]
Organism
dfi  Desulfovibrio fairfieldensis
Brite
KEGG Orthology (KO) [BR:dfi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dfi03019]
    AXF13_14440
Messenger RNA biogenesis [BR:dfi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AXF13_14440
SSDB
Motif
Pfam: HD tRNA_anti-codon TraI_2 Cas3_HD HDOD
Other DBs
NCBI-ProteinID: AMD91230
UniProt: A0A0X8JM11
LinkDB
Position
3428195..3429256
AA seq 353 aa
MEKGSYVKDIGPASEARGLFVVSQAAQGQSRNGPYWRLTLADASGSLEAKIWHPLSAEFS
DIPVGSVVWAEGRAGLYRDQVQLTVEQLRPLSEEEGAAVDQAALLPASPFSLDEMLDELL
ALCKEEFSHAPWRKLVLGVFNNQELRASFRVCPAAKGVHHAYVGGLLEHTLSVFRLCRRI
ADQYPELDRQALLAGALFHDFGKIREFSGGLANDYTDEGRLLGHLMLGVEMLAPYLAKSG
LDEGLQRHLKHLILSHHGELQFGAVRQPHTAEALALHYADNLDAKMAQCRGLFDQLGGEG
QDWTPWQATLGRPLYRAPRTPEASKPETAASASSAAKGRKKAVREECLSLLKV
NT seq 1062 nt   +upstreamnt  +downstreamnt
atggaaaaaggttcttacgtcaaagacatcggtccggcctccgaggcgcgcggcctgttc
gtggtcagtcaggcggcccaggggcagtcgcgcaacgggccctactggcggctgaccctg
gccgacgccagcggcagcctggaggccaagatctggcatccgctcagcgcggagttcagc
gacattcccgtgggttccgtggtctgggccgaaggccgcgccggtctctaccgggaccag
gtccagctcacggtggaacagttgcgcccgctctccgaagaggagggcgcggctgtggac
caggccgcgttgctgcccgccagcccattttccctggacgaaatgctggacgagctgctg
gccctctgcaaagaggaattcagccacgcgccctggcgcaagctggtgcttggcgtgttc
aacaatcaggaattgcgcgcgtccttccgggtttgcccggcggccaagggcgtgcaccac
gcctatgtgggcggcctgctggaacataccttgagcgtgttcaggctctgtcggcgcatt
gccgaccagtatcccgaactggaccgccaggccctgctggccggggccctgttccacgat
ttcggcaagatccgcgaattttccggcggcctggccaacgactacacggatgaaggccgc
ctgctgggccatctcatgctgggcgtggaaatgctggccccgtacctggctaaatccggt
ctggacgaggggctgcaacgccatctcaagcatctcattctgagtcatcacggcgagttg
cagttcggcgcggtgcgccagccgcacaccgctgaggctctggccctgcactatgccgac
aacctggacgccaaaatggcccagtgccggggcctgtttgaccagttgggcggggaaggc
caggactggacgccctggcaggccactctggggcggcccctgtaccgggccccgcgcacc
ccggaagcctcgaaaccggagaccgcggcttccgcctcgtccgcggcaaaaggccgtaaa
aaagcggtgagggaagaatgtttatctcttttgaaggtatag

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