Desulfovibrio ferrophilus: DFE_0100
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Entry
DFE_0100 CDS
T05829
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dfl
Desulfovibrio ferrophilus
Pathway
dfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFE_0100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfl03019
]
DFE_0100
03009 Ribosome biogenesis [BR:
dfl03009
]
DFE_0100
Enzymes [BR:
dfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DFE_0100
Messenger RNA biogenesis [BR:
dfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DFE_0100
Ribosome biogenesis [BR:
dfl03009
]
Prokaryotic type
rRNA helicases
DFE_0100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BBD06826
UniProt:
A0A2Z6AUG0
LinkDB
All DBs
Position
101353..103011
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AA seq
552 aa
AA seq
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MDAFKALGLSDQTLEALTRKGFTEPTPIQEATVPLLLSGESDVVGLAATGTGKTAAFGLP
IVELAEPNAGFVQALVLCPTRELAVQVAREIGSLRGSKRLKVLTVYGGQPFGPQLKGLRD
GSDVVVGTPGRVLDHLRRGSLDLSELTFFVLDEADEMLDMGFIDDIQEVMSAASPDKRSL
LFSATMSRDVMRIAREFMREHEVVSVQGSEEKPLTEQYFHEVPEMSRFDALTRVIDCADD
FYGLVFCRTKADVDEVAERLSSKGYPAEALHGDITQGRREKILGAFRKKRTQILVATDVA
ARGIDVPDLTHVINLGLPQDSESYVHRIGRTGRAGKTGTAVTIIAPREFGKLRWMSRAAD
VNLPKRRLPSGEDVVNARKSRIAAEAMACLESDNFTSCMDLAATLLEQGDPMEVLAAVLQ
QANGDRLDPASYTTIADPERSGGSGGLSGNVELFMAAGRGDGLSLQKLLDFIHEETGVFK
SKIMDVRLFPKHTTFAAPARDAEVLLRHFKNSDGGRPLIRRDRSNGGPAPKRGGYQRGGY
HRNKGRGNHRAA
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggatgcattcaaagccctaggcctgtccgaccagactctcgaagctcttacccgtaaa
ggtttcaccgagcccacccccattcaggaagccaccgtgccgttgcttttgtccggcgag
tccgacgttgtcggcttggccgccaccggtactggcaagaccgcagctttcggtctgccc
attgtggagttggcagagcctaacgccggttttgtacaggctctcgttctgtgccccacc
cgcgaattggctgtgcaggttgcccgtgaaatcggatccctgcgaggctccaagcgcctg
aaggtgctcaccgtgtacggtggacagccctttggcccgcagctcaaaggcctgcgtgac
ggttcggacgtcgtggttggtactcccggccgcgtgctggaccatctgcgccgtggtagt
ctggatctgtctgaattgaccttctttgttctggacgaagccgatgagatgctcgacatg
ggcttcatcgacgatatccaggaagtcatgtctgctgcttctcctgacaagcgttccctg
ttgttctcggccaccatgtctcgcgacgtcatgcgcattgcgcgtgagttcatgcgtgag
cacgaggtcgtttccgttcagggtagcgaagagaagcctttgacagaacaatattttcat
gaagtgcccgagatgtcccggttcgacgctctgacccgggttattgactgcgctgacgat
ttttacggattggttttctgccgtaccaaggccgatgtggatgaggtggccgagcggttg
agctccaagggttaccccgctgaagcgctgcacggcgacatcactcagggtcgtcgcgag
aagatccttggtgccttccgcaaaaaacggacgcagatccttgtggccacggatgtggct
gcccgcggtatcgatgtccccgacctgacccatgtcatcaacctgggactgccgcaggac
tccgagtcctacgtgcaccgtatcggtcgcactggccgcgctggcaagaccggcaccgcc
gtgaccatcatcgcccctcgtgaattcggtaaattgcgctggatgtcgcgtgctgcagat
gtgaatctgcccaagcgcaggctgcccagcggtgaagacgtcgtgaatgcgcgcaagtcg
cgcatcgctgccgaggccatggcttgtctggagtctgacaacttcacaagctgcatggat
cttgccgccacgttgttggagcagggcgatcccatggaagtgcttgccgccgtgttacag
caggctaatggtgatcggcttgatcccgccagctacaccaccatcgctgatccagagcgt
tccggcggaagtggcggactgagcggcaatgttgagttgttcatggccgctggtcgtggt
gatggcttgagcctgcagaagcttctggacttcatccatgaggaaaccggcgtattcaag
agcaagatcatggatgttcgcctgttccccaagcataccactttcgcggctcctgcccgt
gatgccgaagtactgctccgccatttcaagaactccgatggtggtcgaccgctgattcgt
cgtgatcgctccaatggtgggcctgcccccaagcgtggcggttaccagcgtggtggttac
catcgcaacaaggggcgcggtaatcatcgcgccgcttaa
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