Desulfovibrio ferrophilus: DFE_0378
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Entry
DFE_0378 CDS
T05829
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dfl
Desulfovibrio ferrophilus
Pathway
dfl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dfl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DFE_0378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfl03021
]
DFE_0378
03400 DNA repair and recombination proteins [BR:
dfl03400
]
DFE_0378
Enzymes [BR:
dfl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DFE_0378
Transcription machinery [BR:
dfl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DFE_0378
DNA repair and recombination proteins [BR:
dfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DFE_0378
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BBD07104
UniProt:
A0A2Z6AV46
LinkDB
All DBs
Position
419748..423854
Genome browser
AA seq
1368 aa
AA seq
DB search
MVQLFKHFGKIASNHTVPHLLNLQVDSYKRFLQLDCPPASRKDEGLEGVFRSVFPIEDFN
KTASLEYVSYDISPPKYDEAECIAKGLTFEAPVRITVRLVVYDVDEETENRTIRDIKEQD
IYFGTISLMTDKGTFIVNGTERVIVNQLQRSPGIIFEHDSGKSHSSGRVLYSCRIIPMRG
SWLDFDFDHKDILHVRIDRRRKMPSTILYKAMGMSKAEILSYFYDTEKYRLEKGRVLRQL
DADRFCKEVAFVDVAGSDGEIIATQGKPITKRLFKKMLKDGVTEHEVDPAGLETMFLAVE
IVDKKSGEVLADAGEVMSHELIEKLEAAKVTEIEMLYTRGAEVSSSIRDTLMLDKTTDTA
SAQVEIYRRLRPSSPPTPEIASTFFENLFRNPDYYDLSSVGRYKLNSRLGLDEPLDNRTL
TNQDILRAIKLLVQLKDSRGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMS
LQEVATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTR
ERAGFEVRDVHVSHYGRICPIETPEGPNIGLIVSLTTHSKVNDFGFIESPYRVVTDGKVT
DDVRYLDASMEASEVIAQANAPLDETKGFINPMVNARINGDPQLVPNEDVTMMDISPSQI
VSISAALIPFLEHDDANRALMGSNMQRQAVPLLESHMPLVGTGMEGSVARDSGACLLATN
DGVIEFVDADKIVVAYDEGVAKPAGGVKSYDMVKHHKSNQNSCFGQKPRVKPGQRVVKGE
VLADGPSIENGELALGKNLMVAFMPWCGYNFEDSILISERMVKEDVYTSVHIEEFELVAR
DTKLGPEEVTRDIPNVGEDMLRNLDESGIIRIGANVAPDDILVGKITPKGETQLTPEEKL
LRAIFGDKARDVKNTSLKVPPGIEGTVIDVKVFNRRSGDKDDRTKEIEDLELASLDRKEL
QHVAALGNSIRRKMWDVVQGKQLASSVAGKRKGEVLAEAGATLQEDVFSEIPVKKLGGLF
KAKSVNDEVKEFLDDYERQVRFIKDIYEVKRGKVTEGDDLPPGVIKMVKVYLAVKRKLSV
GDKMAGRHGNKGVVSNILPAEDMPFFADGTPVDIVLNPLGVPSRMNIGQVMEIHLGLGCA
MLGRKIAEMIDSGEHLKDVRRDIKAIYNSPETDKVIDDLSDEEVVDMAKKLRRGVVAKTP
VFDGAVEGEIWNWLEQAGMDSDGKSVLYDGRTGVPFHNRVTVGIMYMLKLHHLVDEKIHA
RSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVQGRVKMY
EKIVKGENFLEAGLPESFNVLIKELMALGLDVQLNYEEGATGRPRFRQ
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggtccaacttttcaaacatttcggcaagatcgcctcgaaccacaccgtaccgcacctg
ctgaatcttcaggtggattcctacaagcgctttctgcagcttgattgtccgcctgccagt
aggaaagacgaaggtctcgaaggcgtgttccggtccgtgtttcccattgaggacttcaat
aaaaccgcaagccttgagtacgtcagctacgacattagcccgccgaagtacgacgaggcc
gagtgcattgcaaaggggctgaccttcgaagctcctgtgcgtatcactgtgcggcttgtt
gtctacgatgtggacgaggaaacagaaaaccgtaccatccgtgatatcaaagagcaggat
atctactttggcaccatttcgttgatgacggacaagggaacgttcatcgttaacggaact
gagcgtgtcattgttaaccagctccagcgttcacccggtatcatctttgagcatgattcc
ggtaaatcgcattcttccggtcgagttctctattcctgccgtatcattcccatgcgtggg
tcctggctggactttgactttgaccacaaagacattctgcatgtgcgtatcgaccgccgc
cgcaagatgccgtccactatcctctataaggccatgggcatgtccaaggccgagattctc
tcctacttctacgacacggagaaatatcgactggagaagggacgcgttctgcgccagctt
gatgctgaccgcttctgcaaagaagttgcgttcgttgatgtggcgggctcggatggcgaa
atcatcgccacccagggcaaacccatcactaagcgtctgttcaagaagatgctcaaagat
ggcgtgaccgagcatgaagtcgatcccgcaggcctggagaccatgttcctggccgttgag
attgtggacaagaagagtggcgaagtcctggccgatgctggcgaggtcatgtcccatgaa
ctgatcgagaagttggaggctgccaaggtcaccgagattgagatgctgtacactcgtgga
gccgaggtttcctcctccattcgtgacaccttgatgctcgacaagaccacggacaccgct
tctgcccaggtcgagatttatcgtcgcctgcgccccagctcgcctccgactcccgagatc
gcgtccacgttctttgagaacctgttccgcaaccccgattactatgacctgtcgagtgtt
gggcgttataagctcaattcgcgtctgggcctggacgagcccctggataacaggactctg
accaaccaggacatcctgcgagccatcaaactgcttgtgcagttgaaggactctcgtgga
cccgctgacgacatcgatcatctcggcaaccgccgcgtgcgtcctgtcggtgaactggtc
gagaaccagtatcgcatcggcctggtgcgtatggagcgagccatcaaggagcgcatgagc
ctccaggaagtggcgactctgatgccccatgatctgatcaaccccaagccggttgcagct
gtcttgaaggagttcttcggaacttcgcagttgtctcagttcatggaccagaccaacccg
ctctccgaggtcactcacaagcgtcgcctgtccgcactcggacccggtggcctgacccgt
gagcgagcaggattcgaagttcgcgacgtgcacgtttctcactacggtcgtatctgcccc
attgagacgcctgaaggaccgaacattggtctgatcgtgtccctgaccacacattccaag
gtcaacgacttcggtttcatcgagtcgccataccgcgtggtcaccgatggcaaggttact
gacgatgtgcgttacctcgatgcctccatggaggcgagcgaagtcatcgcgcaggccaat
gcgccgctggatgaaaccaagggctttatcaatcccatggtcaacgcccgtatcaatggt
gacccgcagttggtccccaatgaagacgtgaccatgatggacatctcgcccagtcagatt
gtgtccatctccgcagcattgattcccttcctggagcatgatgacgccaaccgcgcgctc
atgggctccaacatgcagcgccaggccgtgccgctcctcgagtcccatatgcccctggtg
ggtaccgggatggaaggatccgttgcgcgggactccggcgcctgcctgctggctaccaac
gatggcgtcatcgagtttgtcgatgccgacaagatcgttgtggcctacgacgaaggtgtg
gccaagcctgctggtggcgtgaaaagctacgacatggtcaagcaccacaagtcgaaccag
aatagctgcttcggacagaagccccgggtcaagcctgggcagagagtcgtgaagggtgaa
gttctggccgacggaccgagcattgagaacggcgagcttgccttgggcaagaacctgatg
gtcgccttcatgccttggtgtggttataactttgaggactccatcctcatctccgagcgc
atggtcaaggaagacgtctacacctcggttcacatcgaggagtttgaactcgtcgcccgt
gacaccaagctcggacccgaagaagtcacacgtgatatccccaacgtcggcgaggatatg
ctccgcaacctcgacgaatcgggtatcattcgcatcggtgccaacgtggcccccgatgat
attctggtcggcaaaatcactcccaagggtgagactcagctgactcctgaagaaaagctc
ctgcgcgccatctttggtgacaaggctcgcgacgtaaagaatacctccctcaaggttccg
ccgggaatcgaggggacggtcattgacgtcaaggtcttcaaccgtcgttccggcgataag
gatgaccgcaccaaagagatcgaggatctggagcttgcttccctcgaccgcaaggaactg
caacatgttgccgccttgggtaacagcatccgccgcaagatgtgggatgttgtccagggt
aaacagttggcgtcatccgttgctggcaagagaaagggcgaagtcctggctgaagccggt
gccaccttgcaggaggatgtcttctccgagattcccgtcaagaagcttggcggtctgttc
aaggccaagagcgtcaacgacgaggtcaaagagttccttgatgactacgagcgtcaggtt
cgtttcatcaaagatatctacgaggtcaagcgtggtaaggtcaccgaaggcgacgatctg
cctccgggcgtgatcaagatggtcaaggtctaccttgctgtgaagcgtaagctcagcgtg
ggtgacaaaatggccggacgtcacggtaacaagggtgttgtttccaatatcctgcctgcc
gaagacatgccgttcttcgcggacggaaccccggtggacatcgtgctgaaccccttgggt
gttccttctcgtatgaacatcggtcaggtcatggaaattcaccttggtctgggctgtgcc
atgctcggccgcaagattgccgagatgatcgacagcggtgagcacctgaaggatgtccgc
agggatatcaaggccatctacaactcgcccgagaccgataaggtcatcgacgacctgtct
gacgaagaagtggtggacatggccaagaagctgcgccgcggcgtagtggccaagacccct
gtctttgacggcgcagtcgagggcgagatctggaactggctggagcaggctggcatggat
agcgacggaaaatccgtcctttatgatggccgtaccggtgtgcccttccataatcgggtc
accgtgggcatcatgtacatgctcaaactgcaccacttggttgacgaaaagattcacgca
cgttccaccggtccttacagtctcgttactcagcagccgctgggtggtaaggctcagttc
ggtggtcagcgtttgggtgaaatggaagtctgggcccttgaggcctacggcgcggcgtat
cttctccaggagttcctgaccgtcaaatccgacgatgtgcagggccgtgtgaagatgtac
gagaagatcgtcaagggcgaaaacttcctcgaagccggtctgcccgagtcattcaacgtt
ctgatcaaggaactgatggctctggggctggatgtgcagctcaattacgaagagggcgca
accggcagaccccggttccgccagtag
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integrated database retrieval system
