Desulfovibrio ferrophilus: DFE_0379
Help
Entry
DFE_0379 CDS
T05829
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dfl
Desulfovibrio ferrophilus
Pathway
dfl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dfl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DFE_0379 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfl03021
]
DFE_0379 (rpoC)
03400 DNA repair and recombination proteins [BR:
dfl03400
]
DFE_0379 (rpoC)
Enzymes [BR:
dfl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DFE_0379 (rpoC)
Transcription machinery [BR:
dfl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DFE_0379 (rpoC)
DNA repair and recombination proteins [BR:
dfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DFE_0379 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BBD07105
UniProt:
A0A2Z6AV82
LinkDB
All DBs
Position
424007..428104
Genome browser
AA seq
1365 aa
AA seq
DB search
MKIALASPEQIREWSFGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRMK
HRGIVCEKCGVEVIASKVRRERMGHVELAAPVAHIWFLKTLPSKIGTLLDMTMSDLEKVL
YFDSFIVLDPGDTSLQLNQIISEEQYYQVMDHYGEEAVNVGMGAEAIRGLLEELNLEELR
INLREESLTTRSQTKKKKLTKRLKIVEAFIDSGNKPEWMIMEVIPVIPPELRPLVPLDGG
RFATSDLNDLYRRVINRNNRLKRLLELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAITG
TNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELFK
PFIYSKLEQRELATTIKSAKKMVEREDLVVWDILEEVVREYPILLNRAPTLHRLGIQAFE
PTLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSIEAQIECRVLLMSTNNILSPANGTP
IIVPSQDIVLGLYYLTSKRSFEQGEGKKFSDKWEVIAALDAEAVSLHARVEVRMDGQLVK
TTPGRVLVSELLPPEVPFDLVNCLLDKGNIKRLVGETYRLAGTKATVILCDKIKDLGYEY
ATRAGVTVGVPDLRIPERKKTILKDSTEEVEAIEKQYQDGIITRTEKYNKVIDVWTKATN
DVSHEMMHSMSVDIITDPVTGKTEENTSFNPIFMMANSGARGNVDQMRQLAGMRGLMAKP
SGEIIETPITSSFREGLSVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVTVT
ELDCGTVDGLEMTDLIQAGDIKERLSARVLGRTTLHPVIHPETGEEVVPRGVIIDEQYAR
AIEGCGVTSVSIRSALTCHCQHGVCAACYGRDLARGHLVNVGETVGIIAAQSIGEPGTQL
TMRTFHIGGTASKEVEQSNHVAQHPGRVTLSRCKMVKNSKGLHLVMGKSGQVGVVDDEGR
EREKYVLPSGAILHVTAGQEVKKGDLIAEWDPFNEPFVSDVDGTLKFNDLIEGKTYQDNV
DETTNRTSQTIMEYRTTNLKPSISVVDENGEPKPRPGSSANVATFPLPVGAILMVRDGDE
VKAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDQGVVSEIDGICSYGPDTKGKRK
IIVTPETGEPREYLIPKGRHITVTEGDFVEAGEMLTEGNAELADILKIKGEKFLANYLVE
EVQAVYRFQGVGINDKHIEIIVRQMLKKVMITYPGETSFLNAEQVDKYRFMVENAKAVKE
GRKPAVAQPLVLGITQASLTTDSFISAASFQETTKVLTEAALKGKEDSLRGLKENVIVGR
LIPAGTGYRRYMDCPIDVPEQLERPDKFLEELQEDPLLLHSSSSS
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcgccctggcatcgcccgagcaaattcgggaatggtcttttggcgaggtcaag
aagcccgagaccattaactaccggaccttcaagcccgagcgcgatggactgttctgcgct
aagattttcgggcccgtgaaggactacgagtgcaactgcggtaaatacaagcgcatgaag
caccgtggtattgtgtgtgagaaatgcggagttgaagtcattgcttccaaggtccggcgc
gagcgcatgggccatgtggaactggctgcacccgtggcacacatctggttcctgaagacc
ttgccttccaagatcggcaccctgctcgacatgacaatgtccgatctcgaaaaggttctg
tacttcgactccttcattgttctggacccgggcgataccagcctgcagttgaaccagatc
atctccgaggagcaatactaccaggtcatggaccactacggcgaagaagccgtgaacgtg
ggcatgggcgcagaggccattcgtggcctgctggaagagctgaatcttgaagagctgagg
atcaatctccgtgaggagtccctgaccacccgctcccagaccaagaaaaagaagctcacc
aagcgtctgaagatcgtggaagcctttattgattccggcaacaagcccgagtggatgatc
atggaagtgattccggtcattccgcccgagcttcgtcctctggttccgttggacggcggt
cgcttcgccacttcggacctgaacgacctgtaccgccgtgtcatcaaccgcaacaaccgt
ctgaaaagactgttggagctgggcgcgccggatatcattatccgtaacgaaaagcgcatg
ctgcaggaagccgttgacgctctgttcgacaacggtcgccgtggccgcgccatcaccggc
actaacggacgccccctgaaatccttgtcagacatgatcaagggtaagcagggtcgtttc
cgtcagaacttgctgggtaaacgtgtcgactactccggtcgttccgttatcgtggttggt
cccaagcttaaactgcaccagtgcggtcttcccaagaagatggctctggagttgttcaag
cccttcatctactccaagttggagcagagggagttggccactaccatcaagagcgccaag
aagatggttgaacgtgaagatctggtggtctgggatatccttgaagaggttgtccgtgag
tacccgatccttttgaaccgtgctccgacccttcaccgcctcggtatccaggcctttgag
ccgaccctggttgaaggcaaggccatccagctgcacccgctcgtctgctccgcctacaac
gcggacttcgacggtgaccagatggccgtgcacgttcccctgtccatcgaggcccagatc
gaatgccgcgtactgctcatgagtaccaacaacattctgtctccggccaacggtactccc
atcattgttccttcgcaggatatcgtgctgggtctgtactacctgacctccaagcgttcc
tttgaacagggcgaaggcaagaagttctccgataagtgggaagtcattgccgctctggac
gccgaggccgtgtctctgcacgcccgcgttgaagtgcgcatggatggtcagttggtgaag
accacccctggtcgcgttctggtcagcgagctgctgccgccggaagtgccctttgacctg
gtcaactgcttgctggacaagggcaacatcaagcgccttgtgggtgagacctaccgtctt
gccggcaccaaggccacggtcattctttgcgacaagatcaaagacctgggttacgagtac
gctacccgcgccggtgttaccgtcggtgtgcccgatctgcgcatccctgaacgcaagaag
accattctcaaggattccaccgaagaggtggaggccatcgagaaacagtatcaggacggt
atcattacccgtactgagaaatacaacaaggtcatcgacgtctggaccaaggccaccaac
gatgtctctcatgagatgatgcactccatgtctgtggacatcatcactgaccccgtgacc
gggaagaccgaggagaacaccagtttcaacccgatcttcatgatggccaactcgggcgct
cgaggcaacgtggaccagatgagacagctggctggtatgcgaggcctgatggccaagcct
tccggcgaaatcatcgagacccccattacttcaagcttccgtgaaggtctgtcggtactg
cagtacttcatctccactcacggtgctcgtaagggtctcgcggataccgcgctgaagacc
gcgaactcaggttatctgacccgtcgtctggttgacgtggcccaggacgtgaccgttacg
gaactggactgcggcactgttgacggccttgagatgaccgacctgattcaagccggtgat
atcaaggaaagactctctgcccgtgtactgggtcgtacgactctgcacccggtcatccat
ccggagaccggagaggaagtcgttcctcgcggcgtgatcatcgatgagcaatacgcacgg
gccattgagggttgtggtgtgaccagcgtgagcatccgttctgcgctgacctgccactgc
cagcacggtgtgtgcgcggcctgttacggtcgtgaccttgcccgtgggcacctggtcaac
gttggtgagacggtgggtatcatcgctgctcagtccatcggtgaacctggtacccagctg
acaatgcgtaccttccacattggtggtacggcttccaaggaagtcgagcagtcgaaccac
gtggcgcagcatcccggtcgagtcaccttgtctcgttgcaagatggtcaagaactccaag
ggactgcatctggtcatgggtaagtccggccaggttggtgtcgtggatgacgagggtcgc
gagcgcgaaaagtacgtgctgccttctggtgccattctgcatgtcactgccggtcaggaa
gtcaagaagggcgacctgattgccgagtgggacccgttcaacgaacccttcgtttctgac
gtcgatggtaccctcaagttcaacgacctgattgaaggcaagacctatcaggacaacgtt
gacgagacgaccaaccgtacgtcgcagacgatcatggaatatcgcaccaccaacctgaag
ccttccatctccgtggtggatgaaaatggcgaacccaagccccgtcccggctcttcggct
aacgtggctacgttcccgctgccggttggcgccattctcatggtgcgcgacggtgacgag
gtcaaggccggtgacatcatcgctcgtaaacctcgtgagacttccaagaccaaagacatc
gtcggtggtctgccgcgagtcgccgagttgttcgaggtgcgtaagcccaaggaccagggc
gtcgtctccgagatcgatggtatctgctcgtacggtcctgacaccaagggtaagcgcaag
atcatcgttactcctgagactggtgaacctagggaatacctcattcccaagggtcgccat
atcacggtgaccgaaggtgacttcgtggaagctggcgaaatgctgaccgaaggcaacgcc
gagctggccgacatcctgaagatcaagggtgagaagttcctggccaactatctcgtggaa
gaggtgcaggctgtgtaccgtttccagggcgttggaatcaacgacaaacacatcgagatc
atcgtgcgccagatgctcaagaaggtcatgatcacctatccgggtgagacgagcttcctg
aacgctgagcaggtggataaatatcgcttcatggttgagaacgccaaggccgtgaaggaa
gggcgcaagcccgccgtggcacagccgctggtgctgggtatcacccaggcctctctgacc
acggactccttcatctccgcagcctccttccaggagaccaccaaggttctgaccgaggcg
gcactcaagggcaaggaagactccctgcgcggcttgaaggaaaacgtcatcgttggccgt
ctgattccggctggtactggttaccgccgctatatggactgccccatcgatgtgcctgag
cagcttgagcgtcctgacaagttccttgaggaacttcaggaagacccgctcctgttgcat
agctcctcttcttcctag
DBGET
integrated database retrieval system
