Desulfovibrio ferrophilus: DFE_0423
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Entry
DFE_0423 CDS
T05829
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dfl
Desulfovibrio ferrophilus
Pathway
dfl03410
Base excision repair
dfl03430
Mismatch repair
dfl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DFE_0423
03430 Mismatch repair
DFE_0423
03440 Homologous recombination
DFE_0423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfl03400
]
DFE_0423
DNA repair and recombination proteins [BR:
dfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DFE_0423
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DFE_0423
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DFE_0423
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BBD07149
UniProt:
A0A2Z6AV78
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All DBs
Position
complement(459928..461631)
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AA seq
567 aa
AA seq
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MNRIWTERPGSDAPTDIDSWAQRLEISPLIARLLWQRGLTTPSEMDVFLSPGLRNLAAPE
TLPGLSDAAQVLAEGLNEGKQFCVWGDYDVDGVTSTALVTSFMNARGIKASHHIPNRLEH
GYGMNLDGIEQLAAQGVKLLLTVDCGITSHEEIARANELGITVVVSDHHLPGEKGLPPAS
AVTNPRLGDCPCPDLAGVGVAFLLMAAVNRLLPGQAVDMRQYLDLVALGTIADVVRLTGQ
NRILVKNGLLLVTEASRPGIAALKEASGYAPSAALGAGQVGFGLAPRINASGRLGDAEAA
FKLLLAPDYETARPFAQQLDALNADRRGQEDTILKEAKKQAEGQLDNLGLVLHAPGWHPG
VIGIVASRIVEAYYRPTLILAEEGDLLKGSGRSTREFDLHAGLTSCADLLAGFGGHKQAA
GMSLEKSNLDALRTAFHQAVLDQCGDKPLTATLFIDGELPFSDIDFDLLKELEMLQPFGP
GNAEPVFSSPPVKVTDRRTFGKDHVKLKLTDEVSGMTLNAKAWRQAEAIGPDIRGKQIRI
AYTPKIDRYQGMATIDLLIKDWKVERS
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgcatctggacagaacgcccgggcagtgatgccccgaccgatattgactcctgg
gcacagcgcctggaaatttcaccccttatcgcccgcctgctctggcagcgtggcctgaca
accccctcggagatggatgtcttcctctctcctggtctacgcaatctggcggcgcctgag
accctgcccggcctaagcgatgcggcacaggtactggccgaaggattgaatgaaggcaag
caattctgcgtctggggagactatgacgttgatggcgtaacctccactgccctcgtcaca
agcttcatgaacgcccgcggcattaaggcctctcaccacatccccaacaggctggagcac
ggctacggcatgaacctggacgggatcgagcaactggctgcccagggcgtaaaactgctg
ctcacggtggattgcggcatcaccagccatgaagaaatcgcaagagccaatgagctcgga
atcaccgtggtcgtgtccgaccaccacctccccggggaaaaagggctaccgccagcctca
gccgtgaccaatccccggcttggagactgcccctgtcccgatttggctggcgtgggcgtg
gccttcctgctcatggcagcggtcaaccgactgcttccggggcaggccgtggacatgcgt
cagtaccttgatctggtggcgctgggcaccatcgcggatgtggtgcgcctgacaggtcag
aatcgtatcctagtcaaaaatggattactgctggtgaccgaggcttcgcgcccgggtatc
gctgctctcaaagaagccagcggatacgccccctctgccgcgctgggagccggacaggtg
gggtttggactagcaccgcgcatcaacgcttcagggcgtctgggcgacgcggaagctgcc
ttcaaactgctgctggcccctgactatgaaacggcccggccattcgcccaacaactcgat
gcgttgaatgcggaccgccgaggccaggaggacacgatcctcaaggaagccaaaaagcag
gctgaagggcagttggataatcttgggctggtgttgcacgcaccgggctggcacccggga
gtcatcggcatcgttgcctcgcgcattgtggaggcctactaccgtccgacattaattctg
gccgaagaaggcgatctgctcaagggctccggccgaagcacccgcgaattcgacctgcat
gcaggtctgacctcctgcgccgacttactggcaggttttggaggccacaagcaggctgcc
ggaatgtctctggagaaatccaatctggatgccctgcgcacagcttttcaccaggccgta
ctcgaccagtgtggtgacaagccactcacggctacgctcttcatcgacggcgaactgccc
ttttccgatatcgatttcgatctgctcaaggaactggagatgctgcaaccctttgggccg
ggcaatgcggaacctgtgttctcctcaccgcctgtgaaggtcacggaccgacgcaccttt
ggcaaagaccacgtcaaactgaagctcaccgacgaggtcagtggcatgaccctgaacgcc
aaagcctggcgacaggccgaagccatcggcccggatattcgcggcaagcagatacgcatt
gcctacacccccaagattgatcgctatcaggggatggctacgatcgacctactgatcaag
gactggaaagtcgaacgttcatag
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