Desulfovibrio ferrophilus: DFE_0890
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Entry
DFE_0890 CDS
T05829
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dfl
Desulfovibrio ferrophilus
Pathway
dfl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DFE_0890 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfl03400
]
DFE_0890 (mfd)
Enzymes [BR:
dfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DFE_0890 (mfd)
DNA repair and recombination proteins [BR:
dfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DFE_0890 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_30
RecG_dom3_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BBD07616
UniProt:
A0A2Z6AWQ4
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All DBs
Position
953273..956620
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AA seq
1115 aa
AA seq
DB search
MVVPGARELHQTKALLELMTPGGGKAFPENPWTMLPPYPAQSADPGRWAGRWAGLYGLAR
GSGARGVLLSVDNLLPKWPPVDVLDHHHLILSKGEELLLDDLLEQFALWGYERVTRVSRP
GEIAMRGDILDLYAPGYDNPLRFEFFGDSLEDIRLFDATTQRSRTDIQQAVILPCAPALL
TPPLVEAAQAKWKRLKGIGELSGQACEELERRVESTNGMTRPGLFYENPTALSQWLPRDA
VWLLCGAGTIRTRLDETEWAWTGRLDEEADQHGWRPPRAQLLETGERARQSWMDRAQIHF
EDLTIGDKKDGAELPEKAIHSFDDLFWKPEERNRPWHALLDSLRKWTRERPQTILSFRNE
ASRRKFMKLAAQDDVVPAMEYAPDRKGLFALISPMRKGLELSWSHVLVLSEDVLQPTPRG
ARLPGSDKKFKGMSSHEDLSVGDLLVHRDWGLSRFEGLHRLELGGVSNDYLLLIYSGEDK
LYLPVDRLDVVQRFKGPEGTTPVLDKMGGAAWTRAKSRARKAVEKIAQGLVEMYAYRQVV
KGHAYAPGGDEYAEFEASFGFEETPDQEAAIRDVMADMDKPAPMDRLVCGDVGFGKTEVA
MRAAFRAAMGGHQVALLCPTTVLAEQHYQNFRRRMEGFPLQVAMLSRFVTRNSQKLTLEA
AARGQVDVLIGTHRMLSKDVNLPNLGLLILDEEQRFGVRHKERIKELRKNIDVLTLTATP
IPRTLQLSLAGIRGLSVMETPPLDRKPVRTSILEREKKPLGAMLARELERDGQVFWVHNR
VKSLPRVVEYVQELAPGARIGLAHGQMKERELEETIHQFWHGELDILVCTAIIESGLDFP
RANTLIVDQAQMFGLGQLYQLRGRVGRSSRQAYACFVIPSLDGLPELSRKRLQVILDMDY
LGAGFKVAMEDLRLRGAGNILGEAQSGTVAKVGLDLYLEMLEEEVRRIRGEDLVQETSPE
LNFMFEAHIPEEYIPDTQERLRYYKALSSAADPAALEELTSEVRDQFGVLPVPLERFLAV
LRFKRLLGRLQVAKADVSPVRAVLTWAEGATVVTSDRIVAFVQENGHEARLLPPGRLEIR
VQTDGSVRQGLSTLEKALTALLPGATTPGNDKLPQ
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggtcgttcccggtgctcgtgaattgcaccagaccaaggctctgctggaactcatgacc
ccgggcggaggcaaagcctttcccgaaaatccctggacaatgctgccgccgtatccggcg
cagtcggcagatcctggacgctgggccggtcgctgggccgggctctacggactggcccgt
ggctctggcgcgcgcggagtattgttgtccgttgataatctgctgcccaagtggccacct
gtagatgttctggaccatcatcacctgatactgtccaagggtgaggaactgctgctggac
gacctgctcgagcaatttgcgttgtggggatacgagcgggtcacccgggtgagtcgccct
ggtgagatcgccatgcgtggcgatattttggatctgtatgcgccaggatacgacaacccg
ctgcggtttgaattttttggagacagccttgaagacatcaggctgttcgacgcgacgaca
cagcgctcccgcaccgatatccagcaagcggtcatcctgccatgcgcgcctgccctcctg
actccgcccttagtggaagcggcgcaggccaagtggaaacgtttgaaggggatcggtgaa
ctttcagggcaggcctgcgaagagcttgaacgccgggttgagtccaccaacggcatgacc
cgtccaggattgttttatgagaatccgactgcgttgagccagtggctcccgcgtgacgcc
gtgtggctgctgtgtggtgcagggaccattcgaactcgcctggacgaaaccgaatgggcc
tggaccgggcgtctggatgaagaggccgatcaacatggctggcgtccgcctcgcgctcag
ctgttggaaactggcgaacgggcccggcagtcctggatggatcgtgcacagatccatttt
gaggacctgaccatcggcgacaagaaggatggagccgaattgccggagaaggcaatccat
tcctttgatgatctgttctggaagccggaagagcgcaatcggccttggcatgcgcttttg
gactccttgcgcaagtggacgcgagagagaccgcagacgatcctgagttttcgtaatgag
gcttcgcgccgcaagttcatgaagctggctgctcaggacgacgttgttcctgcgatggag
tacgcacccgatcgtaaggggctgtttgctctgatttcccccatgcgcaaagggttggag
ctttcctggagccatgtgctggtactgtcggaagacgtattgcagcccactccgcgtggt
gcgcggctacccggttcggataaaaaattcaagggcatgtccagccacgaagacctgagc
gttggcgatctgctggtgcatcgggactggggactgtcaagattcgaagggctgcatcga
cttgagcttggcggagtttccaacgactacctgctgctgatctattcaggggaggacaaa
ctctatttgcctgtggaccgcctggatgttgtgcagcgattcaagggcccggaaggaacg
acaccggtcctggacaagatgggtggtgcggcctggacacgagccaagtccagagcccgc
aaggctgtggagaaaatcgcccagggactggttgagatgtatgcctatcgtcaggtggtg
aaggggcatgcctatgctcccggtggtgacgaatacgccgaattcgaggcctcttttggc
tttgaagaaaccccagaccaggaagctgcgattcgtgacgtgatggccgatatggacaag
ccagcccctatggacagactggtttgtggcgatgtcggtttcggcaagaccgaggttgcc
atgcgggccgcttttcgtgctgccatgggggggcatcaggtggcccttctctgtcccaca
acggtactggccgagcagcattatcagaatttcaggaggcgcatggagggatttcctctt
caggtggccatgctcagccgttttgtcacgcgcaatagtcagaaattgacccttgaagcc
gcagccagggggcaggtggatgtcctgattgggacccaccgcatgttatccaaggacgtc
aatctccccaacctgggattattgattctggacgaggagcaacgcttcggggtgcgacac
aaggagcgcatcaaggaactacgcaagaatattgatgttctgactctgactgccactccc
attccacgcaccttgcagttgtcattggccggaatccgagggctgtcggtcatggaaaca
ccgcctctggaccgcaagcctgtgcgcacttcaattttggagcgggaaaagaaaccactt
ggggccatgctggcgcgtgaactggaacgtgatggacaggttttctgggtccacaaccgg
gtcaagagtttacctcgggtcgttgaatacgtgcaggaattggcgcccggtgcccgtatc
ggcctggctcatggtcagatgaaggagcgtgagctggaggagaccatccatcagttctgg
catggggaattggatattctggtttgtacggccattatcgaatccgggttggattttcct
cgggccaataccctgatcgtcgaccaggcccaaatgttcggtttggggcagctgtatcag
ctccgaggacgggtggggcgcagttcccgccaggcttatgcctgttttgtgattccctcg
ctggatggactgcccgagctttcgcgcaagcgtttgcaggttattttggacatggactat
ctgggagccggtttcaaggtcgccatggaagacttgcggctgcgtggggccggcaacatt
ctgggtgaagctcagtccggtactgtggccaaggttgggctggatctgtaccttgagatg
cttgaagaggaagtgcggcgtattcgtggtgaggatcttgtacaggagaccagtcctgaa
ttgaatttcatgttcgaagcccatattcccgaagaatatattccagacacgcaggagcgg
ttgcgttattacaaggccctgtcctctgctgctgacccggcagccttggaagagttgacc
tccgaggtgcgtgaccagttcggagtgctgccggtgccattggaacgttttctggctgtg
ctgcgtttcaaacgtctgcttgggcgtttgcaggtggcgaaggcggatgtttcgccggtc
agggctgtactgacctgggccgaaggtgcaacggttgtcacctctgacagaattgtcgcc
tttgttcaggaaaatggacacgaggcacgtttgttgccgccgggcaggctggaaattcgt
gttcaaactgatggtagcgttcgccaggggttgtccactctggaaaaggcgttgaccgct
cttctccccggggctacaacacccggaaacgacaaattgccccagtaa
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