Desulfovibrio ferrophilus: DFE_2090
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Entry
DFE_2090 CDS
T05829
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dfl
Desulfovibrio ferrophilus
Pathway
dfl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DFE_2090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfl03400
]
DFE_2090
Enzymes [BR:
dfl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
DFE_2090
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
DFE_2090
DNA repair and recombination proteins [BR:
dfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DFE_2090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
BBD08816
UniProt:
A0A2Z6B096
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All DBs
Position
complement(2238182..2239024)
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AA seq
280 aa
AA seq
DB search
MPELPEVETIARGLATDLAEASISGVRLLESGSLSTGTGALGHDEFLAELPGARILRVRR
RAKVLFMDLATAKRPLLHLAFHLRMTGRLTVEPAQTEPRPHTRIVFDLADGRHLFFADVR
KFGSCRAMPLEGLPHWAFWATLGPEPLEINAEQFAGLFKGRRGGIKALLLNQKFIAGIGN
IYADESLFRAGIRPDAAADRVSRARLMRLHQELVEVLNEAIAANGSSISDYVNARGDAGA
FQNDFRVYGRAGQPCRNCQTLLAKRTVAGRTTVFCHKCQR
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcccgaggttgaaaccattgcccgagggttggcaaccgatcttgccgag
gcatccatctccggcgttcggttgctggagtccgggtccctgtccacgggaaccggagcg
ttaggccacgatgaattcctggccgagttgcccggggcacgcatcctgcgggtccggcgc
cgcgccaaggtgttgtttatggaccttgccaccgccaagcgcccactcctgcatctggcc
tttcacctgcgcatgaccggtcggcttactgtggaacccgcgcagaccgagccccggccc
catacccgcatcgtctttgatcttgccgatggcaggcatctgttttttgcggacgtccgc
aagttcggatcgtgtcgggccatgccgttggaaggtctgccgcactgggcattctgggct
accctcgggccagagccgctggagatcaacgccgaacagtttgcgggtctgttcaagggc
cgccgggggggcatcaaggccctgctgctcaaccaaaaattcatcgctggtattggcaat
atctacgccgacgaatccctgttccgggcgggtatccgccccgatgctgcggccgatcgt
gtgtcgcgggcgcggctcatgcgtctgcaccaagagttggtggaagtcctgaacgaggcc
attgccgccaatggctcctccatcagcgattacgtcaatgcccggggtgatgccggagcc
tttcagaatgatttcagggtctatggccgtgcggggcagccgtgccgcaattgccaaacc
ctacttgccaagcgtacggtggcgggccggacaacagtcttctgtcataagtgccaacgg
tag
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