Desulfovibrio ferrophilus: DFE_2261
Help
Entry
DFE_2261 CDS
T05829
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dfl
Desulfovibrio ferrophilus
Pathway
dfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFE_2261 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfl03019
]
DFE_2261 (rnr)
03016 Transfer RNA biogenesis [BR:
dfl03016
]
DFE_2261 (rnr)
Enzymes [BR:
dfl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DFE_2261 (rnr)
Messenger RNA biogenesis [BR:
dfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DFE_2261 (rnr)
Transfer RNA biogenesis [BR:
dfl03016
]
Prokaryotic type
tRNA degradation factors
DFE_2261 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
RNase_II_C_S1
S1_RRP5
WHD_TBPIP
Motif
Other DBs
NCBI-ProteinID:
BBD08987
UniProt:
A0A2Z6B0C6
LinkDB
All DBs
Position
2415750..2417918
Genome browser
AA seq
722 aa
AA seq
DB search
MANKKKVKNKPDRGPVDAKGVLRALKEAKRPMRRNEILHALGAYKKDKRDLKAALKVLMD
DGKIIRTRGGSFGLTESMSLVTGELQVQRSGVGFVLPEDQRRKDIFINRRNFGDAWNGDK
VVVAMMPAPRSKGRDMNPEGRVVRVLERKNKRLPVRIERKLGPDLYLSRPTDPRLDFNVM
TDTAHMETRPKDGELLYVEPGDKLDNKLWAATATEVLGNEEDVSVQEKLVKAAHGVPTIF
PNDALHEAQRLPAQPNPADFEGRKDLRELALVTIDGAKARDFDDAVHVRREGNGWRLTVA
IADVSHYVRPGSALDLEAQKRGNSYYFPQSVEPMFPEALSNGLCSLNPDVPRLAMVAEIS
FSADGQPRDEEFYAAVIKSHKRLTYMQVHRALEQNDPKEHEFIGPELMPMLREAEALARV
LNGVRSSRGSLDFDLPEPEIHFNLLGETTDIRPRPRNFAHQIIEEFMVAANESVARRLTV
LDLPCPYRIHPKPDSEKLAGVFKLLARAGITPQSPPKGTITPADLQDLLGVAEGTDLEFM
AGRLVLRSMMQAVYSPSNEGHFGLASECYAHFTSPIRRYADLLVHRSMKKALKMHSEPLP
KPETLSKICESISARERVAMKAEREILKRLTILFLADKVGEEFTGVVNGVAEYGFWVELN
EVMAEGMVRLSTLSDDYYHYLPERQEIVGERTARRFHLGQTVKVKLFSVNLARLEVDLEL
LT
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacaagaagaaagtaaagaacaagcccgacaggggccccgttgatgccaaaggt
gtcctgcgcgccctgaaagaagccaaacgtcccatgcggcgcaacgaaatcctgcacgcg
ctgggggcctacaaaaaagacaagcgggatttgaaagccgccctcaaggtcctgatggac
gacggcaagatcattcgcacccgtggagggtcctttggcctgaccgagagcatgtcgctg
gtgaccggcgagttgcaggtccagcgctcgggggtcggatttgtcctgcccgaagaccaa
cgccgcaaagatatcttcatcaaccgccgcaacttcggtgacgcctggaatggtgacaag
gtcgtggtggcgatgatgcccgccccccgttccaaaggccgtgatatgaaccccgagggg
cgtgtggtgcgcgtcctggagcgcaagaacaagagactgcccgtacgcatcgaacgcaaa
ctcgggccggacctgtatctctcgcggcctacggacccacggctggacttcaatgtcatg
acggacacggctcacatggagactcgtcccaaggatggcgaacttctctatgtggaaccc
ggcgacaagctggacaacaagctctgggcagccacagccaccgaggtccttggcaacgag
gaagacgtcagcgtccaggagaaactggtcaaggcagcccacggcgtgcccaccatcttc
cccaacgacgccctgcacgaggcccaaaggctccctgcccagccaaatccggcagacttc
gaaggccgcaaggacctgcgcgagctggcccttgtcaccatcgacggtgccaaggcccgc
gactttgacgacgccgtgcatgtgcgccgcgaaggtaatggctggcgactgaccgtggcc
attgccgatgtctcgcactacgtcaggccgggcagcgctctggacctcgaagcccagaaa
cgtggcaactcctattatttcccgcaatccgtggagcccatgttccccgaggccctgtcc
aacgggttgtgcagcctgaacccggacgtcccgcgtctggccatggtcgcagagatatcc
ttcagcgccgatgggcagccgcgtgatgaagagttctatgctgcggtaatcaagagtcac
aagcgtttgacctacatgcaggtccaccgcgctctggaacagaacgatcccaaagaacac
gagttcattggccccgagctgatgcccatgctgcgcgaagccgaagccctggcccgggtg
ctgaatggtgtgcgttcgagtcgcggatctctggacttcgacctgcccgagcccgaaatc
cacttcaatctgctgggcgaaacaacagacatcaggcccagaccacgcaacttcgcccac
caaatcattgaagaattcatggtagcagccaacgaatccgttgcccggcgactgaccgtt
ttggatctgccctgtccgtaccgcatccatcccaagcccgatagcgaaaagctggctggg
gtcttcaagctcctggcgcgtgcgggaatcaccccccagtcaccacccaagggcaccatc
acccccgcagacctgcaagaccttctgggcgtggccgaaggtacggacctggagttcatg
gccggacgactggtactacgctccatgatgcaggccgtgtattcgccctccaatgaaggc
cacttcggtctggcctcggaatgctacgcccatttcacctctcccatccggcgttacgca
gacttgctggtgcatcgctccatgaagaaagccctgaagatgcactccgaaccgctgcca
aagcccgaaaccctgagcaaaatctgcgaaagcatcagtgcccgcgaacgcgttgccatg
aaggccgaacgcgaaatcctgaaacgcctgacgatcctcttcctggcggacaaggtcggc
gaagaattcactggcgtggtcaacggagtggccgaatacggcttctgggtggaactgaac
gaagtcatggccgaaggcatggtcaggctctccacactgtccgacgactactaccattac
ctgcccgaacgtcaggaaatcgtgggcgagcgcacagcgcgacgcttccaccttgggcaa
accgtcaaggtcaaactgttcagcgtcaatctggcccgccttgaagtcgacctggaactc
ctgacgtag
DBGET
integrated database retrieval system
