Desulfovibrio ferrophilus: DFE_2612
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Entry
DFE_2612 CDS
T05829
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dfl
Desulfovibrio ferrophilus
Brite
KEGG Orthology (KO) [BR:
dfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dfl03016
]
DFE_2612
Enzymes [BR:
dfl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DFE_2612
Transfer RNA biogenesis [BR:
dfl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DFE_2612
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Gene cluster
GFIT
Motif
Pfam:
RNB
Prot_ATP_ID_OB_C
Motif
Other DBs
NCBI-ProteinID:
BBD09338
UniProt:
A0A2Z6B1K4
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All DBs
Position
2821205..2823250
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AA seq
681 aa
AA seq
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MSTLVRYPGPGCIVEFLHGNKPNVAWVLEEQSGRLRVLTINRREMKLPAGRILPWPGPAH
PAEASREEIAHILEDHESRREELASQVDPEEIWELAQGDVDRASITWFTGLTWNEPDADH
IAAMGRRMLEQKTHFKFHPPEFEVYPAQKVESRRVEEETRRQREHIVTAAQQFFHALWEA
RSKGRSAPEPPEGMAETLHAILIAAMADTSGSPELTIWNTVRKGLPDLPQLPMFLGQTWG
VIPEHFNMQLLQEGYDWGDDWAREFDAEMDELEKGLAALAQEPEETPFISIDSASTHDID
DAFHVQSGPDNGYRLQVALACPALGWEFGSPLDRAVRERASSVYLPEGASHMMPERYGIG
LFSLYQQQPKPALVLDCNLDENGNMLSMEPRCTWVRIEQNSTYQAMEEALDTPDCDPCLT
LAAELGAKLRQRRIDNGAVVVDRPDPTITLEGEGAETRVLIEDSPRYDRAQATVSEFMIL
ANSSIGQWAADRGIPMLFRTQDITLPGDAAGVWDTPEDAHRIVRMMAPTTQELTPRLHAT
IGAKAYAPLTSPIRRYADLMNLTQVLHALEHDDTPRWDREELLLMLPHITARTEAAGRIQ
RFRPRYWKLVHFKQRKKEMFSTTVVEDGQLVILAMPKEQMYVRCPRNLLGDKIYPGQRFA
VRLNKVNPLTNEIRVVEALEE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccctcgtgcgttatccgggtccgggctgcattgtggaattcctccacggcaac
aagcccaatgtagcctgggtccttgaagaacagtccgggcgcttgcgcgtcctgaccatc
aaccggcgggaaatgaaactcccggccggacgcatcctgccgtggcccgggccggcacac
ccggcagaggcttcgcgcgaggagatcgcgcatatcctcgaggaccacgagtcccggcgc
gaggaactggcctcacaagtggaccccgaggaaatctgggaactggctcagggcgatgtg
gaccgcgcctccatcacctggttcacgggcctgacctggaacgagcccgatgccgaccac
atcgcagccatgggccgccgcatgctggagcagaagacccacttcaaattccaccccccc
gaattcgaagtctatcccgctcaaaaggtggagagccgccgcgtggaggaagagacccgg
cgtcagcgcgaacacattgtcaccgccgcccagcagtttttccacgccctgtgggaagcc
cgcagtaagggccgcagtgcccccgaaccgcccgaaggcatggcggagactctgcatgcc
atcctcattgctgccatggccgacacctccggttccccggaactgaccatctggaacact
gtacgcaagggcctgcccgacctgccacagttgcccatgttcctgggccagacctggggc
gtgattcccgaacatttcaatatgcagctgttgcaggaaggctacgattggggcgatgac
tgggcccgtgaattcgacgccgagatggatgaattggaaaaagggctggccgcactagct
caggagccagaagagactccctttatcagcatcgactcggcctccacccacgatatcgac
gacgcctttcacgtgcaatccggcccggacaacggctaccgcctgcaagtggccctggcc
tgcccggccctgggctgggagttcggctcccctctggaccgcgccgtgcgcgaacgcgca
agctccgtgtacctgcccgagggtgccagccacatgatgcccgaacgctacggcatcggc
ctgttcagtctctatcagcagcagcccaagcccgcgctggtgctggactgcaacctggat
gagaacggcaacatgctttccatggagccacgctgcacctgggtgcgcatcgaacagaat
tctacctatcaggccatggaagaggccctggacacaccggactgtgacccttgcctgacc
cttgcggccgaattgggggccaagctcagacagcgtcgcatcgacaatggcgccgtggtc
gtggacaggcctgaccccactatcaccctggaaggcgagggggcagagacccgcgtcttg
atcgaggactctccccgctacgacagggctcaggccacggtcagcgaattcatgatcctg
gccaactccagcatcggccagtgggctgcggacaggggcatccccatgctcttccgcact
caggacatcaccctgcccggtgatgccgccggagtctgggacacgcccgaggatgcccat
cgcatcgtgcgcatgatggctcccacgacccaggagttgaccccgcgcctgcacgccacc
atcggagccaaggcctatgccccgctgacctcgcccatccggcgctatgcggacctgatg
aacctgacccaggtgctgcacgccctggagcacgacgataccccccgctgggaccgcgag
gaactgctgctcatgctgccgcacatcactgcccgcaccgaggccgcaggacgcatccag
cgtttccgaccccgctactggaagctggtgcacttcaaacagcgcaagaaggagatgttc
tccaccaccgtggtggaagacggacagctggtgattctggccatgcccaaggagcagatg
tacgtgcgctgcccgcgcaacctgctgggcgacaagatctacccaggccagcgctttgcc
gtgcgcctgaacaaggtcaacccactgaccaacgaaatccgggtcgtggaagcactggaa
gaataa
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