Desulfovibrio ferrophilus: DFE_2999
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Entry
DFE_2999 CDS
T05829
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
dfl
Desulfovibrio ferrophilus
Brite
KEGG Orthology (KO) [BR:
dfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dfl03016
]
DFE_2999
Enzymes [BR:
dfl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
DFE_2999
Transfer RNA biogenesis [BR:
dfl03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
DFE_2999
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
BBD09725
UniProt:
A0A2Z6B2Q9
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All DBs
Position
3255671..3256273
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AA seq
200 aa
AA seq
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MVAPDSFRLFVGVALPALYQDGLAKVSSTWSPRLKSKVTWTRPANAHLTLKFLGNVAPSA
LDDVKHALTGVEFAPFVLQAGGCGAFPAKGRPAVLWLGLERGAEKLAKLAASVDQTLKPL
GFAPEGKPFHPHLTLLRVRLDKKASQTREARSDPWPEMMEGIARERWEAFALERFTLFRS
VLGPDGPRYTALVDFGATSL
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
gtggttgcgccggattcgttcaggctgtttgtgggagtggcattgcctgccctctatcag
gacggtctggcgaaggtgtcgagcacctggagcccgcgtctgaagtccaaggtcacttgg
accagaccggcaaacgctcatctgaccctcaaatttctgggtaacgtcgccccgtccgct
ttggacgatgtgaagcacgccttgaccggggtggagtttgcaccgtttgtcttgcaggct
ggaggctgcggggcgtttccagccaagggaaggcccgcagtgctgtggctggggctggag
cgtggggcagaaaagctggcgaaactggctgcgtcggtggatcagactctcaagccgttg
ggctttgcgccagagggcaaaccttttcatccacacctgacgctgttgcgggtcagactg
gacaaaaaagcctcccagaccagagaggcaagatcggacccatggcccgagatgatggaa
ggcattgcgcgtgagcgctgggaagcgttcgcgctggagcggtttacgctcttcagaagc
gtactcggcccggatgggccgaggtacacagcacttgtcgatttcggggccacttccttg
tga
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