Desulfovibrio ferrophilus: DFE_3129
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Entry
DFE_3129 CDS
T05829
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dfl
Desulfovibrio ferrophilus
Pathway
dfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFE_3129 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfl03019
]
DFE_3129 (rhlE-2)
Enzymes [BR:
dfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DFE_3129 (rhlE-2)
Messenger RNA biogenesis [BR:
dfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DFE_3129 (rhlE-2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBD09855
UniProt:
A0A2Z6B332
LinkDB
All DBs
Position
complement(3391989..3393416)
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AA seq
475 aa
AA seq
DB search
MTFDCFSLRPSIREGIAAAGFTSPTPIQEQAMPPALEGRDILGLAQTGTGKTAAFALPLL
ERLAAGPRGHLRALIVAPTRELAEQINDEIISLGRKTGLRSITVYGGVGKSPQINKLRRG
AEIVVACPGRLLDLMNDRHANLSRLEILVLDEADRMFDMGFLPDIRRILSQAPPKRQTML
FSATMPTDIRKLADEALNSPKVVKIGLAMPAETVSHSLYPVPGHLKTSLLKHVLGITRTG
SVLVFTRTKHRAKRLAQQLERAGHKATSLQGNLSQNRRQEALSGFKAGRYDIMVATDIAA
RGIDVSSVTHVINLDVPDTADAYTHRIGRTGRAARTGDALTFVTPEDTSDVRDIERAIGE
KIARVVLDDFDYNAPKPIGSNDNHRPPRPPRAKAGAGRPGRSRRGSNGGGSSRSNGGNGN
GGGSSRSNESSGGGGQRRSQPSGGSGGGQRRSQPSSAGGGQRRSQPSSGRRRASR
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgattgcttttccctgcgtccctccattcgtgagggcatcgctgctgccgga
tttacctcccccacccccattcaggagcaggccatgccgccagctctggaagggcgggac
atcctgggcctggcccagaccggtaccggcaaaacggccgctttcgccctgccgcttttg
gagcggctggccgcagggccacgcggacatctgcgtgcactgatcgttgctcccacccgt
gaactggccgagcagatcaacgacgaaatcatttctctgggccgcaagaccggcctgcgc
tccatcaccgtctacggcggtgtgggcaaatcaccccagattaacaagctcaggcgcggc
gccgaaatcgttgtggcctgtccgggccgcctgctggacctgatgaacgatcgccatgcc
aacctctccaggctcgagattctggttctggacgaggccgaccgcatgttcgacatgggc
tttttgcccgacatcagacgcatcctgtcccaggcaccgcccaaacgacagaccatgctc
ttctcggccaccatgcccacggacatccgcaagctcgctgacgaagccctgaacagtccc
aaggtggtcaagatcggtctggccatgcctgccgaaaccgtatcgcactccctgtacccc
gtgcccgggcacctgaagaccagcctgctcaagcatgtgctgggcatcacccgcaccggc
tcggtgctggtcttcacccgcaccaagcacagggccaagcgcctggctcagcagctggag
cgtgccggacacaaggctaccagcctgcagggcaacctgtcgcagaaccgtcgccaagag
gcactgtccggcttcaaggctggacgttacgacatcatggtcgccacggacattgccgct
cgcggcatcgatgtctccagcgtgacccatgtcatcaaccttgacgtacccgacactgcc
gacgcctatacccaccgtattggccgcaccggtcgtgctgcccgtacgggcgacgctctg
accttcgtcacccccgaggacacctcggatgtgcgtgacatcgaacgcgccattggcgaa
aagattgcccgcgtggtgctggatgatttcgactacaatgcgcccaagcccattggcagc
aatgacaatcatcgtcccccacgtccgccccgcgccaaggctggtgctggcaggcccggt
cgctcccgcaggggcagcaacggtggcggtagcagccgcagcaacggtggcaatggcaac
ggtggcggtagcagccgcagcaacgaatccagcggtggtggcggacagcgccgaagccag
ccttccggcggtagtggcggtggacaacgccggagccaaccctccagcgctggtggcggt
caacgccgaagccagccgtccagcggacgacgccgcgcctctcgctga
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