Dorea formicigenerans: NQ560_01390
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Entry
NQ560_01390 CDS
T08666
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dfm
Dorea formicigenerans
Pathway
dfm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dfm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQ560_01390 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfm03021
]
NQ560_01390 (rpoC)
03400 DNA repair and recombination proteins [BR:
dfm03400
]
NQ560_01390 (rpoC)
Enzymes [BR:
dfm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQ560_01390 (rpoC)
Transcription machinery [BR:
dfm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQ560_01390 (rpoC)
DNA repair and recombination proteins [BR:
dfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQ560_01390 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UWP20130
LinkDB
All DBs
Position
258200..261874
Genome browser
AA seq
1224 aa
AA seq
DB search
MPENSKEQSYQPMTFDAIKIGLASPEKILEWSKGEVTKPETINYRTLKPERDGLFCERIF
GPSKDWECHCGKYKKIRYKGVVCDRCGVEVTKASVRRERMGHIALAAPVSHIWYFKGIPS
RMGLILDLSPRTLEKVLYFASYIVLDKGETDLQYKQVLSEQEYQEARESWGKGFRVGMGA
ESILELLQAIDLEKEYEDLTEGLKGATGQKRARIVKRLEVVEAFRESGNKPEWMIMTNVP
VIPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLKRLLELGAPDIIVRNEKRMLQEAV
DALIDNGRRGRPVTGPGNRALKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPELKI
YQCGLPKEMAIELFKPFVMKELVQNGTAHNIKNAKKMVERLQPEVWDVLEDVIKEHPVML
NRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRFL
LLSPNNLLKPSDGGPVAVPSQDMVLGIYYLTQERPGAAGEGKIFKSVNEAILAYENQAIT
LHSKIKVRVTKTMPGGEEITGIVESTLGRFIFNEIIPQDLGFVDREKEENKLLLEIDFHV
GKKQLKQILEKVINTHGATATAEVLDAVKAIGYKYSTRAAMTVSISDMTVPPQKPQMIQQ
AQDTVDRITKNFKRGLITEEERYKEVVETWKATDDKLTEALLSGLDKYNNIFMMADSGAR
GSDKQIKQLAGMRGLMADTTGHTIELPITSNFREGLDVLEYFMSAHGARKGMSDTALRTA
DSGYLTRRLVDVSQELIIHEVDCAKKDAPIPGIFVKAFMDGKEEIESLQERITGRYLCYD
IVDKDGNVLVKKNHMVTPKRAELICKKGVNENGEPLTQIKIRTILTCRSHSGVCAKCYGA
NMATGEPVQVGEAVGIIAAQSIGEPGTQLTMRTFHNGGVAGGDITQGLPRVEELFEARKP
KGLAIITEIAGTANLNDTKKKREIIVTNHETGESKAYLIPYGSRIKVADGAELEAGDELT
EGSINPHDILRIKGIRAVQDYMIQEVQRVYRLQGVEINDKHIEVIVRQMLKKIRIEESGD
TEFLPGTNVDRLEFEDVNEVLEAEGKEPAIGEPIIMGITKASLATNSFLSAASFQETTKV
LTEAAIKGKIDPLVGLKENVIIGKHIPAGTGMRKYRDIRLNSELSMDDDLFFEEGLDDDD
DLDILNTDFSDDDLLEENELTTEE
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaaatagtaaagaacaatcatatcagccaatgacttttgatgcaatcaaaatc
gggttggcatcacctgaaaagattctggagtggtcaaaaggcgaagtaacaaagcctgag
actattaactatagaaccttaaaaccagagagagatggtctgttctgtgaaagaattttt
ggaccaagcaaagactgggagtgtcactgcggtaaatacaaaaaaatccgttataaaggt
gttgtttgtgaccgttgtggtgtagaggttactaaggcaagtgtacgtcgtgaacgtatg
ggacatattgccctggcagccccggtatctcatatctggtactttaaaggaatcccgagc
cgtatgggattgatccttgacttgtctccaagaacactggagaaagtattatattttgct
tcttatatcgtacttgataaaggcgagacagacctgcagtataagcaggttctgtctgag
caggagtatcaggaagcaagagaatcctggggaaaaggtttccgtgttggaatgggagct
gaatctatcttagagcttcttcaggcaatcgaccttgaaaaagaatacgaagatctcaca
gaaggtctcaaaggcgctaccggacagaaacgtgcaagaatcgtaaaacgtctggaagtt
gtagaagctttccgtgagtctggaaacaaaccggaatggatgatcatgacaaatgttccg
gttatcccgccagatcttcgtccaatggtacagcttgatggtggacgttttgcaacatct
gacctgaatgatctgtacagaagaattatcaatagaaataaccgtctgaaacgccttctt
gagttaggcgctccagatattatcgtaagaaatgaaaagagaatgcttcaggaagcggta
gatgccctgatcgacaacggccgtcgcggacgtccggtaacaggacctggaaaccgtgca
ctgaaatctctgtccgatatgctgaaaggtaaatccggacgtttccgtcagaacctgctt
ggtaagcgtgttgactactctggacgttccgttatcgttgtaggaccggaacttaagatt
taccagtgtggtctgccgaaagagatggcaattgagctgttcaagccatttgttatgaaa
gagcttgttcagaacggaactgcacacaacattaaaaatgctaaaaagatggttgaaaga
cttcagccagaggtttgggacgtccttgaagatgtcatcaaagagcatccggttatgttg
aaccgtgcacctacactgcacagacttggtattcaggcatttgagccaatccttgtagaa
ggtaaggctatcaagcttcatccacttgtttgtacagcgtttaacgccgacttcgatgga
gaccagatggctgtccatcttccactttccgtagaagcacaggctgagtgcagattctta
ctgctctcaccaaacaacctcctgaaaccatctgatggtggtccggtagccgttccttca
caggatatggtacttggtatttactatctgactcaggaaagaccaggtgcagcaggagaa
ggtaagattttcaagagtgtaaatgaagcaatccttgcttatgagaaccaggcaatcaca
cttcactctaagattaaagtacgtgtgacaaagacaatgccaggtggagaagaaataaca
ggaattgtagagtccacacttggacgtttcattttcaacgagatcatcccacaggatctt
ggattcgttgatcgtgaaaaagaggagaacaaacttcttctggagattgatttccacgta
ggaaagaaacagttaaagcagatccttgagaaggttatcaatacacacggagcaactgca
acagcagaagttctggatgctgtaaaagcaattggatataaatattctacaagagctgcc
atgaccgtatctatttccgatatgacggtacctccacagaaaccacagatgatccagcag
gcacaggatactgtagaccgcatcactaagaacttcaaacgtggtctcatcacagaggag
gagcgttacaaagaagttgtagagacatggaaggcaactgacgataaactgacagaggca
ctgctttctggtcttgataaatacaataacatcttcatgatggctgattccggagcccgt
ggatctgacaaacagatcaaacagcttgcaggtatgcgtggattgatggctgatacaact
ggtcatacaatcgagttgcctatcacttcaaacttccgtgaaggacttgacgtactggag
tatttcatgtctgcccatggagcacgtaaaggtatgtctgatacagctcttcgtacagcc
gattcaggatatctgacaagacgtcttgttgacgtatctcaggagctgatcattcatgaa
gtagactgtgcaaagaaagatgcaccgattcctggaatttttgtaaaagcattcatggat
ggaaaagaagaaatcgaaagtcttcaggagcgtattacaggacgttacctgtgctatgac
attgtagataaagatggcaatgttcttgttaagaagaaccatatggtaacaccaaaacgt
gcagaactgatctgcaagaagggtgtaaatgagaacggagaaccattaacacagattaag
atccgtacaatccttacatgtcgctcacacagtggcgtatgtgcaaaatgttatggagcc
aacatggcaacaggtgagccggtacaggttggagaggctgtcggaattattgctgctcag
tcaatcggagagcctggtacacagcttacaatgagaacattccataatggtggagttgcc
ggtggagatatcacacagggacttcctcgtgtcgaggagctttttgaggcaagaaagcct
aagggacttgcaatcatcacagagattgcaggaactgcgaatttgaacgacacgaagaag
aaacgtgagattatcgtaacaaatcatgagacaggtgaatcaaaagcatatctgattcct
tatggatcacgtattaaggtagcagacggagcagaacttgaggccggtgatgagctgact
gaaggtagtatcaatccgcatgatatcttaagaattaaaggtatccgtgcagttcaggat
tacatgatccaggaggtacagagagtttaccgtctgcagggtgttgagatcaacgataag
catatcgaggttatcgttcgccagatgcttaagaagattcgtatcgaggagtctggagat
acagagttccttccgggaacaaatgtagacagacttgagttcgaggatgtgaatgaggta
ctggaggcagaaggaaaagagcctgcaatcggagagccgatcatcatgggtattacgaag
gcttctcttgcaaccaattccttcctgtcagccgcttctttccaggagacaacaaaggtt
ctgacagaggcagcaatcaaaggaaagatcgatccgctggtaggtctgaaagagaacgta
atcatcggaaaacatatcccggctggtacaggtatgagaaagtatcgtgatatcagactg
aatagtgagttatctatggatgacgatctgttctttgaagaaggattagatgatgatgac
gatttagatattctgaatacagatttttcagatgatgatctgttagaagaaaatgaactt
acaacagaagaataa
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