Dorea formicigenerans: NQ560_06210
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Entry
NQ560_06210 CDS
T08666
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dfm
Dorea formicigenerans
Pathway
dfm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NQ560_06210 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfm03400
]
NQ560_06210 (mfd)
Enzymes [BR:
dfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NQ560_06210 (mfd)
DNA repair and recombination proteins [BR:
dfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NQ560_06210 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UWP21004
LinkDB
All DBs
Position
1254225..1257569
Genome browser
AA seq
1114 aa
AA seq
DB search
MQALLKPLLELAEYEDIVKKKKEAPGVLMLTGCVNSQKTHMMYALSDGCCYKVIACSSEA
KAKQIYEEYRFLDAAISFYPAKDLLFYQADIRSKELVSQRMQVIQAVLKGEPITVVASFD
AFMDALLPKEMIKSRVIKICSDETLNLDELSVKLAQCGYDREIEVAGPGQFAVRGGILDV
YPLTEELPVRIELWGDEVDSIRTFDPETQRSIEKLDEVEVFPATEFPEEEEKRVSFLDYF
EKENTILFLDEPVRLKEKGEGVEEEFLEAQKRRAQSGYEVADSEAVLFTTQEIMGKMNEY
SSVGFQALDMRCPGLNIRASYSLQTKNVDPYNRSFELLTQDLKKMKRNQSRVILLSGSRT
RARRLAEDLRDYNLSSFYSEDMDREVEPGEIMTAYGYIAEGYEYPLLNFVVISETDIFGK
KKKKKRRTTYEGRKIQSFSELKPGDYVVHENHGLGIYQGIEKIEVDKISKDYMKISYAKG
GNLYIPATQLDLIQKYAGSDSKKPKLNRLGTQEWTKTKAKVRGAVKEIAKDLVELYAARQ
NQDGFVYGEDTVWQKEFEEMFPYEETEDQLLAINAVKKDMESHKIMDRLICGDVGYGKTE
IAIRAAFKAVQENKQVVYLVPTTILAQQHYNTFCQRMKDFPVRVDLMCRFRTPAQQRDTI
QNLKRGLVDIVVGTHRVLSDDIEYKDLGLLIIDEEQRFGVQHKEKIKKLKKNVDVLTLTA
TPIPRTLHMSLIGIRDMSVLEEAPQDRLPIQTYVMEYNDEMVREAIERECARNGQVYYVY
NRVEDIAEVTAHIQKLVPELNVSFAHGQMKEHELEKIMYDFINGDIDVLVSTTIIETGLD
ISNVNTMIIHDADRLGLSQLYQLRGRVGRSGRMAYAFLLYRKDKLLKEIAEKRLAAIREF
TDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYDMYCKMLNEAVKHLKGELSEEDTF
TTALDVNVDAYIPDSYIPNEYHKLDIYKRIAAIESEEEMDDMIEELIDRFGDIPKKVELL
LEVARLKNLAHQAYVTEVTQKGVTYTFRMYEKAKIHVERIPDLLKQFPEDLSFKADISDP
KFIYQRKKKTKRGEVENPIEVVKKVLIGIKGLLD
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggcgttacttaagccgcttttggaactggcagaatatgaagatatcgtaaaaaag
aaaaaagaagctccgggagttctgatgctgacaggttgtgtgaattcccagaagactcat
atgatgtacgcacttagcgatggctgttgttataaagtcatcgcctgttccagtgaggca
aaagcgaaacagatttatgaagagtatcgttttttagatgcagccattagtttttatcca
gcaaaagacttgctgttttaccaggcagatattcgtagtaaagagctggtcagtcagcga
atgcaggtgatacaggcagttttaaaaggcgaaccgataactgtggttgctagttttgat
gcatttatggatgcactccttccaaaagaaatgataaagagcagggtgatcaagatatgc
tccgacgagactctgaatctggatgaattgtctgtgaagctggcacagtgtgggtatgac
agagagatagaggtggcaggaccggggcagtttgcggtccgtggcggcatcttggatgta
tatccgctgacggaggagctcccggttaggattgaactttggggagatgaggtggattct
attcgaacctttgatccggagacgcagcgatctatcgagaagcttgacgaggtagaagtg
tttccggctacagaatttccagaggaagaagaaaaaagagtttcttttctggattatttt
gaaaaagaaaatacaattcttttcttagatgagcctgtgcgtttgaaggaaaaaggggaa
ggagtggaagaagaatttctggaagcccagaaacgacgtgcccagagcggatacgaagta
gccgacagcgaagctgtgctttttacaacgcaggagattatggggaaaatgaatgaatat
tccagcgtgggatttcaggcgttggatatgcgttgccctgggttgaatatccgggcaagt
tatagtcttcaaacgaaaaatgtggatccatacaatagaagttttgaacttctaacgcag
gatctgaaaaaaatgaaacgaaatcagagccgtgtcattctgctttccggttccagaaca
agagcaaggcgcctggcagaagatcttcgagattacaatctgagcagcttttacagtgaa
gatatggatcgtgaagtagaaccgggagaaattatgactgcttatggttatattgcagaa
ggctatgagtatccacttttgaattttgttgtaatttcagaaacggatattttcggaaag
aaaaaaaagaaaaaacgccgtaccacttatgaagggcgtaagatccaaagcttctcagaa
ttaaaacctggagattatgtggtacatgagaatcatggactgggaatttatcaaggaatt
gaaaaaatcgaagtggataagatttccaaagactatatgaagatttcctatgctaagggt
ggaaatctttatattccggcaacacagttggatctgatccagaaatatgccggttctgat
tcaaaaaaaccaaaacttaaccgtcttggaactcaggagtggacaaagacgaaggcaaag
gttcggggggcagttaaagaaattgcaaaagatctggtagaactttatgcagcaagacag
aatcaggatgggtttgtttacggggaggatacagtctggcagaaagaatttgaggaaatg
ttcccgtatgaggagacagaagatcagcttctggcgattaatgctgtgaagaaggacatg
gaaagccacaagatcatggatcgtctgatctgtggtgatgtaggttatggaaagacggaa
attgcaatccgtgcggcatttaaggcagtacaggaaaataagcaggtggtctatctggta
ccgaccactattttggcacagcaacattacaatacattttgccagagaatgaaggatttc
ccggtccgggtagatctgatgtgccgattcaggactccggctcagcaaagagatacgatt
cagaacttgaaacgcgggctggtagacattgtggttggaacccaccgtgtgctcagtgat
gatattgagtataaggatctgggattgctgatcatcgacgaggagcagcgttttggagtc
cagcacaaggagaaaatcaaaaagttaaagaaaaatgtagacgttctgacgttgacggca
acgccgattccaagaactcttcatatgagccttattggaatccgtgatatgagcgtgctg
gaggaggcaccgcaggaccggctgccgatccagacgtatgtgatggaatataatgatgag
atggtcagggaggcaatcgaacgagaatgtgcgagaaacggacaggtctactatgtgtac
aatcgagtggaagacattgcagaggtaacagcgcatattcagaaacttgtcccggagtta
aatgtatcctttgcccacggacagatgaaggagcatgagcttgaaaagatcatgtatgat
tttattaatggagatattgatgtgcttgtgtcgacaacgattattgaaacgggtcttgat
atatccaatgtaaataccatgattattcacgacgcagaccggcttggcctttcccagctc
tatcagcttcgtggccgcgtcgggcgttccgggcgtatggcctatgcatttttgttgtac
cggaaggacaaattattgaaagagattgcagagaagcgtctggcggcaatccgggaattt
acagatcttggatcgggattcaaaattgccatgcgtgatcttgaaatccgtggagctgga
aatcttcttggtgccgaacagcacgggcatatggaagcggtcggatacgatatgtactgc
aaaatgttaaatgaggcagtcaaacatttaaaaggggaattatcagaagaggatacattt
acaacagcattggatgtcaatgtcgatgcgtatattccggattcttatataccaaatgaa
tatcataagctggatatttataagagaattgctgccatcgagtctgaggaagagatggac
gatatgatagaggagttgattgaccgttttggagatattcctaaaaaagtggagctactt
ctggaagtagcaaggcttaagaatctggcgcaccaggcgtatgtgacagaggtgacccaa
aaaggtgtgacctatacattccgtatgtatgaaaaagcaaaaatccatgtagagcggatc
ccggatcttttaaaacaatttccggaagatctgtcatttaaggcggatatatcggatccc
aaattcatttaccagagaaagaagaaaacaaagcgtggtgaagtggagaatccaattgag
gttgtgaaaaaagtgttaattggtataaaaggattgcttgactag
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