Dickeya fangzhongdai DSM 101947: CVE23_01185
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Entry
CVE23_01185 CDS
T05277
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Pathway
dfn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CVE23_01185 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfn03021
]
CVE23_01185 (rpoC)
03400 DNA repair and recombination proteins [BR:
dfn03400
]
CVE23_01185 (rpoC)
Enzymes [BR:
dfn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CVE23_01185 (rpoC)
Transcription machinery [BR:
dfn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CVE23_01185 (rpoC)
DNA repair and recombination proteins [BR:
dfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CVE23_01185 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
LPD39
Motif
Other DBs
NCBI-ProteinID:
ATZ92710
UniProt:
A0A2K8QIZ5
LinkDB
All DBs
Position
257211..261434
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEHQKNAQGEWTQKTSLIDTTVGRSILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPAKKVEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRNGEEEKQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKWCDLLEENSVDAVKVRSVVGCETDFGVCAKCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
TNAKFVKNSAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGSEVNGGDTVANW
DPHTMPVITEVGGSIRFTDMIDGQTITRQTDELTGLSSIVVLDSAERTGGGKDLRPALKI
VDANGDDVLIPGTDMPAQYFLPGKAIVQLEDGSQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVHAVTRYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVNPGSSEFLEGEQVEMSRIKIANRQLETDGKISATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEVPA
VAQVSADEASANLAELLNAGFGSSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcctggtcttttggtgaagtgaaaaag
ccagaaaccatcaactaccgtacgttcaaaccggaacgtgacggcttgttctgcgcccgt
atttttgggccggtaaaagactacgagtgcttgtgcggtaagtacaagcgcctgaaacac
cgtggcgtgatttgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgccgtgag
cgcatgggccacatcgagctggcgtctccgaccgctcacatctggttcctgaaatccctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgcgtactgtac
ttcgaatcctatgtggtggtcgaaggcggcatgaccaatctggagcgccgtcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgccaagatg
ggcgccgaggcgatccaggctctgctgaaaaacatggatctggagcaggaatgcgaacag
ctgcgcgaagagctgaacgaaaccaactccgagaccaaacgtaagaagctgaccaagcgc
atcaagctgctggaagcattcgtgcagtccggcaacaagccggagtggatgatcctgacc
gtgctgccggtgctgccgccggatctgcgtccgctggttccgctggacggcggtcgtttc
gcgacctccgacctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtttgaaa
cgcctgctggatctggctgcgccggacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggtggatgcgctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aagcgtccgctgaaatcgctggctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaagcgcgtggactactccggtcgttccgtaattaccgttggtccgtac
ctgcgtctgcaccagtgcggtctgccgaagaaaatggcgctggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggtctcgctaccaccatcaaagccgccaagaaaatg
gtggaacgcgaagaagcagttgtatgggatatcctggatgaagtcatccgcgagcacccg
gtactgctgaaccgtgcgccgaccctgcaccgtctgggtattcaggcgttcgaaccggta
ctgatcgaaggtaaagccattcagctgcacccgctggtgtgtgcggcgtataacgccgac
ttcgacggtgaccagatggctgttcacgtaccgctgacgctggaagcccagttggaagcg
cgtgcgctgatgatgtccaccaacaacattctgtcgccggcgaacggtgagccgatcatc
gttccgtctcaggacgtggtgttgggtctgtactacatgactcgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgaccggtccgaaagaagccgagcgtatctatcgcgctggc
ctggcttcgctgcacgctcgcgtgaaggtgcgtattaccgagcaccagaagaatgcgcag
ggcgagtggacgcagaaaaccagcctgatcgacactaccgtgggtcgttctatcctgtgg
atgatcgtgccgaaaggtctgccttactccatcgtcaaccaggcgctgggtaagaaagcg
atctccaagatgctgaacacctgctatcgcgtgttgggtctgaagccgacggttattttt
gccgaccagatcatgtacaccggttttgcttacgcggcgcgttccggttcttccgttggc
atcgacgatatggtcattccggcgaagaaagtggaaatcatcagcgaagcggaagccgaa
gttgccgagatccaggagcagttccagtctggtctggtaaccgcgggcgaacgttacaac
aaagtcatcgacatctgggccgcggcgaacgagcgtgtggccaaggcgatgatggaaaac
ctctctaccgaaacggtgatcaaccgtaacggcgaagaagagaaacaggtttcctttaac
agcatctttatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcggggatgcgtggtctgatggcgaagccggacggctccatcatcgaaacgccgatcact
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgcgcgt
aaaggtctggcggataccgcgttgaagacagcgaactccggttacctgactcgtcgtctg
gttgacgtggcgcaggacctggtggtgaccgaggacgattgcggtacccacgaaggcatc
atgatgacgccggttatcgaaggcggcgacgtgaaagagccgctgcgtgagcgcgtactg
ggccgtgtaacggcggaagacgtgctgaaaccgggcaccgcagacattctggttccgcgc
aacacgctgctgaacgagaaatggtgtgacctgttggaagaaaactcggtcgacgcggtg
aaagtacgctccgtagtaggttgtgaaaccgacttcggcgtgtgcgccaagtgctacggt
cgcgacctggcgcgtggtcacatcatcaacaaaggtgaggccatcggggttatcgcggcg
cagtccatcggtgaaccgggtactcagctgacgatgcgtacgttccacatcggtggtgcg
gcatcccgtgcggcagccgaatccagcattcaggtgaaaaacaaaggtagcctgaaactg
accaacgccaagttcgttaagaacagcgccggcaagctggttatcacctcgcgtaacacc
gagctgaaactgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggc
gcggttatgggcaaaggcgatggctcagaagttaacggtggcgataccgtagcgaactgg
gatccgcataccatgccggttatcaccgaagtgggcggtagcattcgctttaccgatatg
atcgatggccagacgattactcgtcagaccgacgaactgaccggcctgtcctccatcgtg
gtactggacagtgcggaacgtaccggtggcggtaaagacctgcgtccggcgctgaaaatc
gttgacgctaacggcgacgacgtactgattccgggcaccgacatgccggcgcagtacttc
ctgccgggtaaagcgattgtccagctggaagacggttctcagatcggcgcgggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggatattaccggtggtctgccgcgt
gttgccgacctgttcgaagcccgtcgtccgaaagagccggcgattctggcggaaatcagc
ggcgtggtgtccttcggtaaagaaaccaaaggcaaacgtcgtctggtgatcacaccggtt
gacggcagcgaaccgtacgaagagatgattccgaagtggcgtcagctcaacgtgttcgaa
ggcgaacgtgtggaacgcggcgacgtgatttccgacggtccggaatctccgcatgacatc
ctgcgcctgcgcggcgtacacgcggtaacccgttacatcgtgaacgaagtgcaggaagtt
taccgactgcagggcgtgaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgtcaatccgggcagctctgagttcctggaaggcgagcaggtg
gaaatgtcgcgcatcaagatcgccaatcgtcagttggaaacggacggcaagatttcggca
acttacagccgcgacctgctgggtatcaccaaagcgtctctggctaccgagtccttcatc
tccgctgcgtcgttccaggaaacgacccgcgtgctgacggaagcggcggttgccggcaaa
cgcgatgagctgcgtggcctgaaagagaacgtcatcgtgggtcgtctgatcccggccggt
accggctatgcgtaccatcaggatcgcatgcgccgccgtcaggctggcgaagtcccggca
gtggctcaggtgagcgcggatgaagcatctgccaacctggctgaactgttgaacgcgggc
tttggcagcagcgacgacgaataa
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