Dickeya fangzhongdai DSM 101947: CVE23_01470
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Entry
CVE23_01470 CDS
T05277
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
dfn
Dickeya fangzhongdai DSM 101947
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfn03019
]
CVE23_01470
Messenger RNA biogenesis [BR:
dfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CVE23_01470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Cyt_bd_oxida_II
T4SS_pilin
Motif
Other DBs
NCBI-ProteinID:
ATZ92757
UniProt:
A0A2K8QGW7
LinkDB
All DBs
Position
313870..315816
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AA seq
648 aa
AA seq
DB search
MGLTARISILMTMLTTLAVVLMLASSIFSFVCYSQQRMEHQLRAVAASIDQALLVQPPGS
IQFWLPAVMKAAGIVELEIRDGHESLYLLRLPEMLSDGEDRALLYRHTRLSLLHHTDVRV
NVTYVDPLFGIPRYLKSALSIVLVILLIAVTVFHGVRWLRRQMAGQEQLEKRARRILAGE
RDTVMHGSVHEWPATASGALDQLLLDLAEAREARSRVDTLIRSFAAQDAQTGLNNRLFFE
NQLATQLEDPEDVGTHGVVMMIRLPDFDTLQETHGYGGVLEEYRNTLINLLSTFVLRYPS
ALLARYYHSDFTVLLPHRTLKEADSIASQLVKAIDILPVTPLIDREDILHIGISAYHGGQ
TTEQVMESVEDATRNAVLQGGNGWCVYDRRVPEKGRGSVKWRTLLEHTLLRGGPRLYQKP
AITRDGELHHREMFSRIYDGTQELLEAEYMPLVRQLGLTSGYDRQLINRVIALTVSWQDS
VLALPITVDSLLQRPFLRWLRETLLQCPKRQRERLLFELAEADVCQYIGRLRPILAMITG
LGCRLAVTQAGLTLVSTAYIKSLRVEVIKLHPGLVRSLDKRPENQLFVSSLTEACKGTHA
QVFAAGVRTREEWQTLLDKGVCGGQGDLFAASEPVGNTLKKYSPRTYV
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggggttgactgccagaatatcgatattgatgacgatgctaacgacattggccgtagtg
ctaatgttggccagcagcattttcagttttgtgtgttatagccagcaacggatggagcac
cagctcagggcggtggcggcgagtattgatcaggcgctgctggtgcagccgcccggcagt
atccagttctggttgccggcggtgatgaaagcggccggaatcgtggagctggagattcgc
gacggtcacgaaagcctctatttattacgtttgccggaaatgttgtctgacggcgaggat
cgggcgctgctctatcgtcacacccgtttatcgctgctgcaccatactgacgtgcgggta
aacgtaacctacgtcgacccgctgttcggcataccgcgttatctcaaatccgccttgtcc
atcgtgctggtgattttgctgatcgcggtgaccgtgtttcatggcgtgcgctggctacga
cgtcaaatggccggacaggaacagttggagaagcgagcccgacgcattctggcgggcgag
cgcgacaccgtgatgcacggttcggtacacgaatggccggcgacggccagcggcgcgctg
gaccagttgctgctggatctggcggaagcgcgcgaagcgcgcagtcgggtggatacgctg
atccgctcgttcgcggcgcaggatgcgcaaaccggcctgaataaccggctgttttttgaa
aatcagctcgccacgcaactggaagatccggaagacgtcggcacgcacggcgtggtgatg
atgatccgcctgccggattttgacaccctgcaggaaacgcacggctacggcggcgtgctc
gaagagtatcgcaataccctgatcaacctgctgtccacgtttgtcttacgctacccctcc
gcgctgctggcgcgttactaccacagtgattttacggtgctgttgccgcaccgcaccctg
aaagaagcggacagcatcgccagccaactggtgaaagcgatcgatattctgccggttacg
ccgctgatcgatcgggaagacattttgcacatcggcatcagcgcctatcacggcgggcag
accaccgaacaggtgatggaaagcgtggaagatgccacccgcaacgccgtattgcagggc
ggcaacggctggtgcgtttatgaccggcgggtgccggaaaaaggccgcggcagcgtgaag
tggcgcacgctgctggaacataccctgttgcgcggcgggccgcgtttgtatcagaaaccg
gcgattacccgcgacggcgagttgcatcaccgggaaatgtttagccgaatttatgatggc
acccaggaattgctggaggcggagtacatgccgctggtgcgtcagcttggcctgacttcc
ggttatgaccgtcagttgatcaaccgggtgattgccctgacggtcagttggcaggattcg
gtactggctttaccgattacggtggattcgctgttgcagcggccgttcctgcgctggctg
cgcgaaacgttgctccagtgtccgaaaaggcagcgcgagcgattattgtttgaacttgct
gaagcggatgtgtgtcaatatatcggccgtttgcgaccgatacttgccatgatcaccggt
ctgggctgccggctggcggtgacgcaggccgggctgacgctggtcagcaccgcctatatc
aagtcgctgagggtggaggtgatcaagctgcacccggggctggtgcgcagcctggataag
cgaccggagaaccagctgttcgtcagtagtctgaccgaggcctgtaaggggacgcacgcc
caggtgttcgccgccggcgtgcgtacgcgcgaagagtggcagacgttgctggataaaggc
gtttgcggcggtcagggcgatctgttcgccgcttccgagcccgtcggcaacacgctgaaa
aaatattcaccgcgcacgtatgtttga
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